WormBase Tree Display for Gene: WBGene00012589
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| WBGene00012589 | SMap | S_parent | Sequence | Y38E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspe-4 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | Y38E10A.11 | ||||||||
| Molecular_name | Y38E10A.11 | ||||||||
| Y38E10A.11.1 | |||||||||
| CE21591 | |||||||||
| Other_name | CELE_Y38E10A.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nspe-4 | ||||||||
| DB_info | Database | AceView | gene | 2M905 | |||||
| WormQTL | gene | WBGene00012589 | |||||||
| WormFlux | gene | WBGene00012589 | |||||||
| NDB | locus_tag | CELE_Y38E10A.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012589|UniProtKB=Q9NAK0 | |||||||
| family | PTHR34602 | ||||||||
| NCBI | gene | 189658 | |||||||
| RefSeq | protein | NM_064293.2 | |||||||
| TREEFAM | TREEFAM_ID | TF319947 | |||||||
| TrEMBL | UniProtAcc | Q9NAK0 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NAK0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Nov 2008 14:26:07 | WBPerson2970 | Name_change | CGC_name | nspe-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspe | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01385279 | |||||||||
| WBVar01385290 | |||||||||
| WBVar01498435 | |||||||||
| WBVar01892536 | |||||||||
| WBVar01892537 | |||||||||
| WBVar01892538 | |||||||||
| WBVar01505260 | |||||||||
| WBVar01892539 | |||||||||
| WBVar00311705 | |||||||||
| WBVar00311706 | |||||||||
| WBVar00380868 | |||||||||
| WBVar00311707 | |||||||||
| WBVar00380869 | |||||||||
| WBVar00311708 | |||||||||
| WBVar00380870 | |||||||||
| WBVar00311709 | |||||||||
| WBVar00380871 | |||||||||
| WBVar00380872 | |||||||||
| WBVar00311710 | |||||||||
| WBVar00380873 | |||||||||
| WBVar00311711 | |||||||||
| WBVar00311712 | |||||||||
| WBVar01960573 | |||||||||
| WBVar01960574 | |||||||||
| WBVar01960575 | |||||||||
| WBVar00106260 | |||||||||
| WBVar01440911 | |||||||||
| WBVar01960576 | |||||||||
| WBVar01960578 | |||||||||
| WBVar01499956 | |||||||||
| WBVar00000998 | |||||||||
| WBVar01248249 | |||||||||
| WBVar00001003 | |||||||||
| WBVar00001008 | |||||||||
| WBVar00001013 | |||||||||
| WBVar00001018 | |||||||||
| WBVar00001023 | |||||||||
| WBVar00001028 | |||||||||
| WBVar00001033 | |||||||||
| WBVar00001038 | |||||||||
| WBVar00001043 | |||||||||
| WBVar00230429 | |||||||||
| WBVar00230431 | |||||||||
| WBVar00001048 | |||||||||
| WBVar00230432 | |||||||||
| WBVar00230433 | |||||||||
| WBVar00230434 | |||||||||
| WBVar00230435 | |||||||||
| WBVar01500009 | |||||||||
| WBVar01500010 | |||||||||
| WBVar00554650 | |||||||||
| WBVar01577062 | |||||||||
| WBVar02067200 | |||||||||
| WBVar00776606 | |||||||||
| WBVar01685741 | |||||||||
| WBVar01314846 | |||||||||
| WBVar00776607 | |||||||||
| WBVar01314847 | |||||||||
| WBVar00776608 | |||||||||
| WBVar01314849 | |||||||||
| WBVar00776609 | |||||||||
| WBVar00776610 | |||||||||
| WBVar00776611 | |||||||||
| WBVar00776612 | |||||||||
| WBVar01406195 | |||||||||
| WBVar00776613 | |||||||||
| WBVar00776614 | |||||||||
| WBVar00776615 | |||||||||
| WBVar01414276 | |||||||||
| WBVar01498941 | |||||||||
| WBVar00262208 | |||||||||
| WBVar02130905 | |||||||||
| WBVar00262211 | |||||||||
| WBVar01379905 | |||||||||
| WBVar01379906 | |||||||||
| WBVar01499326 | |||||||||
| WBVar01379913 | |||||||||
| WBVar01379914 | |||||||||
| WBVar01379916 | |||||||||
| WBVar01379918 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (62) | |||||||||
| Paralog | WBGene00012587 | Caenorhabditis elegans | From_analysis (3) | ||||||
| WBGene00012594 | Caenorhabditis elegans | From_analysis (3) | |||||||
| WBGene00012604 | Caenorhabditis elegans | From_analysis (4) | |||||||
| WBGene00012591 | Caenorhabditis elegans | From_analysis (4) | |||||||
| WBGene00012590 | Caenorhabditis elegans | From_analysis (4) | |||||||
| WBGene00012603 | Caenorhabditis elegans | From_analysis (3) | |||||||
| WBGene00012593 | Caenorhabditis elegans | From_analysis (3) | |||||||
| WBGene00175028 | Caenorhabditis elegans | From_analysis (2) | |||||||
| Structured_description | Automated_description | Enriched in ADEshL; ADEshR; germline precursor cell; and neurons based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty chemicals including hydrogen sulfide; rotenone; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1412) and Protein of unknown function DUF1412. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38E10A.11 | |||||||
| Corresponding_transcript | Y38E10A.11.1 | ||||||||
| Associated_feature | WBsf657182 | ||||||||
| WBsf222278 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020281 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036838 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056011 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013397 | ||||||||
| Expr1159529 | |||||||||
| Expr2014490 | |||||||||
| Expr2032729 | |||||||||
| Drives_construct | WBCnstr00029897 | ||||||||
| Construct_product | WBCnstr00029897 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (106) | |||||||||
| Map_info | Map | II | Position | 10.4894 | Error | 0.00888 | |||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00065331 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
