WormBase Tree Display for Gene: WBGene00004322
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WBGene00004322 | Evidence | Person_evidence | WBPerson338 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | E03A3 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | rcq-5 | Person_evidence | WBPerson338 | |||||
Sequence_name | E03A3.2 | ||||||||
Molecular_name | E03A3.2 | ||||||||
E03A3.2.1 | |||||||||
CE51498 | |||||||||
Other_name | CELE_E03A3.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | rcq-5 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rcq | ||||||||
Allele | WBVar00093333 | Inferred_automatically | From strain object: RB1714 | ||||||
WBVar00299750 | |||||||||
WBVar01999546 | |||||||||
WBVar00299751 | |||||||||
WBVar01785387 | |||||||||
WBVar02088041 | |||||||||
WBVar00819570 | |||||||||
WBVar00819571 | |||||||||
WBVar00819572 | |||||||||
WBVar00819573 | |||||||||
WBVar00819574 | |||||||||
WBVar00819575 | |||||||||
WBVar00819576 | |||||||||
WBVar00819577 | |||||||||
WBVar00819578 | |||||||||
WBVar00819579 | |||||||||
WBVar00321920 | |||||||||
WBVar00819580 | |||||||||
WBVar01913272 | |||||||||
WBVar00819581 | |||||||||
WBVar00321921 | |||||||||
WBVar00819582 | |||||||||
WBVar00321922 | |||||||||
WBVar00819583 | |||||||||
WBVar00819584 | |||||||||
WBVar00819585 | |||||||||
WBVar00819586 | |||||||||
WBVar00819587 | |||||||||
WBVar01817885 | |||||||||
WBVar00819588 | |||||||||
WBVar00819589 | |||||||||
WBVar00819590 | |||||||||
WBVar00819591 | |||||||||
WBVar00819592 | |||||||||
WBVar00819593 | |||||||||
WBVar00819594 | |||||||||
WBVar00819595 | |||||||||
WBVar00819596 | |||||||||
WBVar01262711 | |||||||||
WBVar00819597 | |||||||||
WBVar00819598 | |||||||||
WBVar00316446 | |||||||||
WBVar01262712 | |||||||||
WBVar00316447 | |||||||||
WBVar00819599 | |||||||||
WBVar01656482 | |||||||||
WBVar00819600 | |||||||||
WBVar01656483 | |||||||||
WBVar00316448 | |||||||||
WBVar00819601 | |||||||||
WBVar01656484 | |||||||||
WBVar00819602 | |||||||||
WBVar01656485 | |||||||||
WBVar00819603 | |||||||||
WBVar01656486 | |||||||||
WBVar01656487 | |||||||||
WBVar00819604 | |||||||||
WBVar01656488 | |||||||||
WBVar00819605 | |||||||||
WBVar01656489 | |||||||||
WBVar00819606 | |||||||||
WBVar01656490 | |||||||||
WBVar01656491 | |||||||||
WBVar00306545 | |||||||||
WBVar00306546 | |||||||||
WBVar00306547 | |||||||||
WBVar02120845 | |||||||||
WBVar02120680 | |||||||||
WBVar00070164 | |||||||||
WBVar01541706 | |||||||||
WBVar00298401 | |||||||||
WBVar01771086 | |||||||||
WBVar00298402 | |||||||||
WBVar00058676 | |||||||||
WBVar00298403 | |||||||||
WBVar02151518 | |||||||||
WBVar00313064 | |||||||||
WBVar00058681 | |||||||||
WBVar00313065 | |||||||||
WBVar00308927 | |||||||||
WBVar00313066 | |||||||||
WBVar00308928 | |||||||||
WBVar00058686 | |||||||||
WBVar00307860 | |||||||||
WBVar00308929 | |||||||||
WBVar00307861 | |||||||||
WBVar00058691 | |||||||||
WBVar00307862 | |||||||||
WBVar00314713 | |||||||||
WBVar00058696 | |||||||||
WBVar00314714 | |||||||||
WBVar00314715 | |||||||||
WBVar00058701 | |||||||||
WBVar00320085 | |||||||||
WBVar00320086 | |||||||||
WBVar00320087 | |||||||||
WBVar00300946 | |||||||||
WBVar00300947 | |||||||||
WBVar00300948 | |||||||||
WBVar00395298 | |||||||||
WBVar00395299 | |||||||||
WBVar00395300 | |||||||||
WBVar00395301 | |||||||||
WBVar00395302 | |||||||||
WBVar00395303 | |||||||||
WBVar00305340 | |||||||||
WBVar00395304 | |||||||||
WBVar00305341 | |||||||||
WBVar00249472 | |||||||||
WBVar00315647 | |||||||||
WBVar00315648 | |||||||||
WBVar00303263 | |||||||||
WBVar00315649 | |||||||||
WBVar00303264 | |||||||||
WBVar00303265 | |||||||||
WBVar01606993 | |||||||||
WBVar00091944 | |||||||||
WBVar01496362 | |||||||||
WBVar02131828 | |||||||||
WBVar02096845 | |||||||||
WBVar01479634 | |||||||||
WBVar01479635 | |||||||||
WBVar00309879 | |||||||||
WBVar00309880 | |||||||||
WBVar00309881 | |||||||||
WBVar00297229 | |||||||||
WBVar00318224 | |||||||||
WBVar00318225 | |||||||||
WBVar00297230 | |||||||||
WBVar00299748 | |||||||||
WBVar00318226 | |||||||||
WBVar00297231 | |||||||||
WBVar00299749 | |||||||||
Strain | WBStrain00031548 | ||||||||
WBStrain00032406 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (37) | |||||||||
Paralog (3) | |||||||||
Structured_description | Concise_description | rcq-5 encodes an ATP-dependent DNA helicase that is a member of the RecQ family of DNA helicases; loss of rcq-5 activity via RNAi results in decreased lifespan and increased sensitivity to ionizing radiation; RCQ-5, a nuclear protein, is expressed in germ cells and oocytes, as well as in somatic cells from embryogenesis through adulthood, with highest levels of postembryonic expression seen in intestinal cells; mutations in rcq-5 exhibit synthetic lethality in combination with mutations in rtel-1, which encodes a functional analog of yeast Srs2 and vertebrate RTEL1, which negatively regulates homologous recombination. | Paper_evidence | WBPaper00006268 | |||||
WBPaper00032312 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Jan 2010 00:00:00 | ||||||||
Automated_description | Predicted to enable 3'-5' DNA helicase activity and four-way junction helicase activity. Predicted to be involved in DNA unwinding involved in DNA replication and double-strand break repair via homologous recombination. Located in nucleus. Expressed in several structures, including germ line; intestinal cell; and oocyte. Is an ortholog of human RECQL5 (RecQ like helicase 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | E03A3.2 | |||||||
Corresponding_CDS_history | E03A3.2:wp252 | ||||||||
Corresponding_transcript | E03A3.2.1 | ||||||||
Other_sequence (28) | |||||||||
Associated_feature | WBsf650952 | ||||||||
WBsf666739 | |||||||||
WBsf991998 | |||||||||
WBsf991999 | |||||||||
WBsf226455 | |||||||||
WBsf226456 | |||||||||
WBsf226457 | |||||||||
Experimental_info | RNAi_result | WBRNAi00043621 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005072 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095187 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083944 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064085 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075596 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00083945 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095186 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012657 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2820 | ||||||||
Expr2821 | |||||||||
Expr2822 | |||||||||
Expr1020707 | |||||||||
Expr1032147 | |||||||||
Expr1147612 | |||||||||
Expr2015280 | |||||||||
Expr2033514 | |||||||||
Drives_construct | WBCnstr00010971 | ||||||||
WBCnstr00035564 | |||||||||
Construct_product | WBCnstr00035564 | ||||||||
Antibody | WBAntibody00000700 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (99) | |||||||||
Interaction (27) | |||||||||
Map_info | Map | III | Position | -4.01168 | Error | 0.003979 | |||
Positive | Positive_clone | E03A3 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4627 | |||||||
5482 | |||||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |