WormBase Tree Display for Gene: WBGene00001397

WBGene00001397 SMap: S_parent: Sequence: W06D12
  Identity: Version: 1
    Name: CGC_name: fat-5
      Sequence_name: W06D12.3
      Molecular_name: W06D12.3
        W06D12.3.1
        CE16551
      Other_name: CELE_W06D12.3 Accession_evidence: NDB BX284605
      Public_name: fat-5
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:24 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fat
    Allele: WBVar02076197
      WBVar00051200
      WBVar01654042
      WBVar01654043
      WBVar01654044
      WBVar01654045
      WBVar01845131
      WBVar01654046
      WBVar01654047
      WBVar01654048
      WBVar01654049
      WBVar01654050
      WBVar01812903
      WBVar01812904
      WBVar01812905
      WBVar01812906
      WBVar01812907
      WBVar01595939
      WBVar01595940
      WBVar01499566
      WBVar01498290
      WBVar01977032
      WBVar01977033
      WBVar01089016
      WBVar01089017
      WBVar01089018
      WBVar01089019
      WBVar01089020
      WBVar01089021
      WBVar01089022
      WBVar01089023
      WBVar01089024
      WBVar01089025
      WBVar01089026
      WBVar01089027
      WBVar01089028
      WBVar01089029
      WBVar01089030
      WBVar01089031
      WBVar01089032
      WBVar02055157
      WBVar01089033
      WBVar01089034
      WBVar02032587
      WBVar00484153
      WBVar00484154
      WBVar00484155
      WBVar00484156
      WBVar00484157
      WBVar00484158
      WBVar01499446
      WBVar01498710
      WBVar00484159
      WBVar00484160
      WBVar01692912
      WBVar00484161
      WBVar01781798
      WBVar01498549
      WBVar00249468
      WBVar01499299
      WBVar00595839
      WBVar00595840
      WBVar01834868
      WBVar01834869
      WBVar01834870
      WBVar01498957
      WBVar01485345
    Strain: WBStrain00004015
      WBStrain00004016
      WBStrain00004022
      WBStrain00008408
      WBStrain00008411
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog (59)
    Paralog: WBGene00001399 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00001398 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: fat-5 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial; when expressed heterologously in S. cerevisiae, FAT-5 rescues the fatty acid auxotrophy of the yeast delta-9 desaturase mutant ole1. Paper_evidence: WBPaper00004149
            WBPaper00004424
            WBPaper00013538
            WBPaper00013550
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable iron ion binding activity and stearoyl-CoA 9-desaturase activity. Involved in long-chain fatty acid biosynthetic process and post-embryonic development. Predicted to be located in endoplasmic reticulum membrane. Expressed in intestine and tail. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 79. Is an ortholog of human SCD (stearoyl-CoA desaturase) and SCD5 (stearoyl-CoA desaturase 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0112160 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:21088)
  Molecular_info: Corresponding_CDS: W06D12.3
    Corresponding_transcript: W06D12.3.1
    Other_sequence (39)
    Associated_feature: WBsf662183
      WBsf717286
      WBsf1002730
      WBsf1021337
  Experimental_info: RNAi_result (16)
    Expr_pattern: Expr4290
      Expr4572
      Expr13449
      Expr1020843
      Expr1158423
      Expr2011438
      Expr2029676
    Drives_construct: WBCnstr00011888
    Construct_product: WBCnstr00011888
      WBCnstr00016673
    Microarray_results (22)
    Expression_cluster (352)
    Interaction (107)
  Map_info: Map: V Position: 13.0767 Error: 0.008308
    Positive: Positive_clone: W06D12 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4301
        5388
        5600
        5656
    Pseudo_map_position
  Reference (88)
  Picture: WBPicture0000013088
    WBPicture0000013098
  Remark (2)
  Method: Gene