WormBase Tree Display for Gene: WBGene00001986

WBGene00001986 SMap: S_parent: Sequence: F43D2
  Identity: Version: 1
    Name: CGC_name: hot-1 Person_evidence: WBPerson42
      Sequence_name: F43D2.4
      Molecular_name: F43D2.4a
        F43D2.4a.1
        CE30076
        F43D2.4b
        CE43028
        F43D2.4b.1
      Other_name: CELE_F43D2.4 Accession_evidence: NDB BX284605
      Public_name: hot-1
    DB_info: Database: AceView gene 5P107
        WormQTL gene WBGene00001986
        WormFlux gene WBGene00001986
        NDB locus_tag CELE_F43D2.4
        Panther gene CAEEL|WormBase=WBGene00001986|UniProtKB=G5EF85
          family PTHR34722
        NCBI gene 179966
        RefSeq protein NM_171552.4
            NM_001136425.3
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc B5U8P6
            G5EF85
        UniProt_GCRP UniProtAcc G5EF85
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele: WBVar02115814
      WBVar02115815
      WBVar02115816
      WBVar02115817
      WBVar02115818
      WBVar02115819
      WBVar02115820
      WBVar01873323
      WBVar01873324
      WBVar02115821
      WBVar01873325
      WBVar02115822
      WBVar01873326
      WBVar02062449
      WBVar01873327
      WBVar01873328
      WBVar02062450
      WBVar01873329
      WBVar01484991
      WBVar00016635
      WBVar02062451
      WBVar02062452
      WBVar01484992
      WBVar01873330
      WBVar02062453
      WBVar01873331
      WBVar01873332
      WBVar02062454
      WBVar00016640
      WBVar01873333
      WBVar02062455
      WBVar01873334
      WBVar02062456
      WBVar01873335
      WBVar00016645
      WBVar02062457
      WBVar01873336
      WBVar02062458
      WBVar02062459
      WBVar01873337
      WBVar01873338
      WBVar02062460
      WBVar00016650
      WBVar02062461
      WBVar01873339
      WBVar02043722
      WBVar02062462
      WBVar01873340
      WBVar00016655
      WBVar01873341
      WBVar01873342
      WBVar01873343
      WBVar00016660
      WBVar01873344
      WBVar01873345
      WBVar01873346
      WBVar00016665
      WBVar01873347
      WBVar01873348
      WBVar00016670
      WBVar01873349
      WBVar01873350
      WBVar01873351
      WBVar01463039
      WBVar00016675
      WBVar01873352
      WBVar01463040
      WBVar01873353
      WBVar01463041
      WBVar01463042
      WBVar01873354
      WBVar00016680
      WBVar01463043
      WBVar01873355
      WBVar01873356
      WBVar01463044
      WBVar01873357
      WBVar01463045
      WBVar01463046
      WBVar00016685
      WBVar01873358
      WBVar01463047
      WBVar01873359
      WBVar01873360
      WBVar01873361
      WBVar00016690
      WBVar02054912
      WBVar01873362
      WBVar01873363
      WBVar01873364
      WBVar01873365
      WBVar01873366
      WBVar01873367
      WBVar01873368
      WBVar01873369
      WBVar01873370
      WBVar01873371
      WBVar01873372
      WBVar01873373
      WBVar01873374
      WBVar01068735
      WBVar01873375
      WBVar01068736
      WBVar01873376
      WBVar01068737
      WBVar01873377
      WBVar00477297
      WBVar01873378
      WBVar01068738
      WBVar01068739
      WBVar00477298
      WBVar01873379
      WBVar00477299
      WBVar01873380
      WBVar01068740
      WBVar01873381
      WBVar00477300
      WBVar01068741
      WBVar01068742
      WBVar01873382
      WBVar00477301
      WBVar01068743
      WBVar01873383
      WBVar00477302
      WBVar01873384
      WBVar01068744
      WBVar00477303
      WBVar00477304
      WBVar01068745
      WBVar01873385
      WBVar00477305
      WBVar01068746
      WBVar01873386
      WBVar01068747
      WBVar01873387
      WBVar00477306
      WBVar01873388
      WBVar00477307
      WBVar01068748
      WBVar01068749
      WBVar00477308
      WBVar01873389
      WBVar01873390
      WBVar00477309
      WBVar01068750
      WBVar00477310
      WBVar01873391
      WBVar01068751
      WBVar01068752
      WBVar01873392
      WBVar00477311
      WBVar01068753
      WBVar00477312
      WBVar01873393
      WBVar01068754
      WBVar00477313
      WBVar01873394
      WBVar00262855
      WBVar01068755
      WBVar01590466
      WBVar01873395
      WBVar00477314
      WBVar00262856
      WBVar01068756
      WBVar01873396
      WBVar01590467
      WBVar01873397
      WBVar01068757
      WBVar01873398
      WBVar01068758
      WBVar01068759
      WBVar01873399
      WBVar01873400
      WBVar01068760
      WBVar01873401
      WBVar01068761
      WBVar01068762
      WBVar01873402
      WBVar01068763
      WBVar01873403
      WBVar01068764
      WBVar01873404
      WBVar01068765
      WBVar01873405
      WBVar01068766
      WBVar01873406
      WBVar01873407
      WBVar01068767
      WBVar01873408
      WBVar01068768
      WBVar01068769
      WBVar01873409
      WBVar01975489
      WBVar01975490
      WBVar01068770
      WBVar01873410
      WBVar01068771
      WBVar01873411
      WBVar01068772
      WBVar01873412
      WBVar01068773
      WBVar01873413
      WBVar01068774
      WBVar01873414
      WBVar01068775
      WBVar01873415
      WBVar01068776
      WBVar01873416
      WBVar01873417
      WBVar01068777
      WBVar01068778
      WBVar01873418
      WBVar01873419
      WBVar01068779
      WBVar01873420
      WBVar01068780
      WBVar01873421
      WBVar01068781
      WBVar01499621
      WBVar01068782
      WBVar01873422
      WBVar01068783
      WBVar01873423
      WBVar01068784
      WBVar01873424
      WBVar01068785
      WBVar01873425
      WBVar01068786
      WBVar01873426
      WBVar01873427
      WBVar01068787
      WBVar01873428
      WBVar01068788
      WBVar01873429
      WBVar01068789
      WBVar01873430
      WBVar01068790
      WBVar01873431
      WBVar01068791
      WBVar01873432
      WBVar01068792
      WBVar01873433
      WBVar01873434
      WBVar01873435
      WBVar01873436
      WBVar01873437
      WBVar01274952
      WBVar01873438
      WBVar01873439
      WBVar01873440
      WBVar01873441
      WBVar01873442
      WBVar01873443
      WBVar01873444
      WBVar01873445
      WBVar01873446
      WBVar01873447
      WBVar01873448
      WBVar01873449
      WBVar01873450
      WBVar01873451
      WBVar01873452
      WBVar01873453
      WBVar01873454
      WBVar01873455
      WBVar01873456
      WBVar01873457
      WBVar01873458
      WBVar01873459
      WBVar01873460
      WBVar01500212
      WBVar01873461
      WBVar01500213
      WBVar01873462
      WBVar01873463
      WBVar01873464
      WBVar01873465
      WBVar01873466
      WBVar01848406
      WBVar01873467
      WBVar01499299
      WBVar02024630
      WBVar01873468
      WBVar01744475
      WBVar02024631
      WBVar01873469
      WBVar01744476
      WBVar02024632
      WBVar01873470
      WBVar02024633
      WBVar01744477
      WBVar01873471
      WBVar01744478
      WBVar02024634
      WBVar02124257
      WBVar00591014
      WBVar00244761
      WBVar00244762
      WBVar01775407
      WBVar00244763
      WBVar01499316
      WBVar01843085
      WBVar00253931
      WBVar01843086
      WBVar02080287
      WBVar02115807
      WBVar02115808
      WBVar02115809
      WBVar02115810
      WBVar02115811
      WBVar01499698
      WBVar02115812
      WBVar02115813
    RNASeq_FPKM (74)
    GO_annotation: 00006241
      00006242
      00006243
      00006244
    Ortholog (32)
    Paralog: WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001989 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001988 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001990 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: hot-1 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain; may be expressed in neurons. Paper_evidence: WBPaper00004498
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43D2.4a
      F43D2.4b
    Corresponding_transcript: F43D2.4a.1
      F43D2.4b.1
    Other_sequence (12)
    Associated_feature (16)
  Experimental_info: RNAi_result: WBRNAi00047186 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014231
      Expr1031155
      Expr1151046
      Expr2012539
      Expr2030778
    Drives_construct: WBCnstr00036539
    Construct_product: WBCnstr00036539
    Microarray_results: A_12_P102468
      GPL13394_WBGene00001986
      GPL13914_F43D2.4
      GPL14144_F43D2.4a_224-283_0.940_13_B
      GPL14144_F43D2.4a_451-510_0.961_2_A
      GPL14144_F43D2.4a_532-591_0.958_5_C
      GPL19516_CGZ0021425
      GPL19516_CGZ0021426
      GPL21109_F43D2.4a
      GPL3518_CE30076
      GPL8304_CE_WBGene00001986_A
      GPL8304_CE_WBGene00001986_B
      GPL8673_F43D2_4P00016
      GPL8673_F43D2_4P00221
      GPL8673_F43D2_4P00393
      GPL9450_F43D2.4
      cea2.c.36296
    Expression_cluster (103)
  Map_info: Map: V Position: 6.5541 Error: 0.003732
    Positive: Positive_clone: F43D2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from [Chou JH, Bargmann CI, Sengupta P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene