WormBase Tree Display for Gene: WBGene00020295

WBGene00020295 SMap: S_parent: Sequence: T07A9
  Identity: Version: 3
    Name: CGC_name: pqbp-1.2 Paper_evidence: WBPaper00032449
      Sequence_name: T07A9.1
      Molecular_name: T07A9.1
      Other_name: CELE_T07A9.1 Accession_evidence: NDB BX284604
      Public_name: pqbp-1.2
    DB_info: Database: AceView gene 4B136
        WormQTL gene WBGene00020295
        WormFlux gene WBGene00020295
        NDB locus_tag CELE_T07A9.1
        NCBI gene 188208
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Jan 2009 13:35:00 WBPerson2970 Name_change: CGC_name: pqbp-1.2
        3 21 Sep 2017 14:00:34 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: pqbp
    Allele: WBVar01838874
      WBVar01499166
      WBVar01646907
      WBVar01499384
      WBVar01499385
      WBVar01542821
      WBVar01607477
      WBVar01607478
      WBVar01607479
      WBVar01499608
      WBVar01500161
      WBVar01500162
      WBVar00880040
      WBVar00880041
      WBVar00880042
      WBVar00880043
      WBVar00251828
      WBVar00880044
      WBVar00251829
      WBVar00880045
      WBVar00880046
      WBVar00880047
      WBVar00880048
      WBVar00880049
      WBVar01499633
      WBVar01825535
      WBVar00415170
      WBVar01499498
      WBVar01499499
      WBVar01828012
      WBVar01499328
      WBVar02049841
      WBVar01499329
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4016
    Ortholog: WBGene00143791 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00064607 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00134857 Caenorhabditis japonica From_analysis: TreeFam
    Paralog: WBGene00012230 Caenorhabditis elegans From_analysis: Panther
      WBGene00020647 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
    Structured_description: Concise_description: pqbp-1.2 encodes a protein that is related to human PQBP1 (polyglutamine bindingprotein 1, mutations in which cause X-linked mental retardation (OMIM:300463)), but which lacks the WW domain (WWD) which has been shown to interact with RNA polymerase II and NpwBP; a mutation in pqbp-1.2, tm3045, is viable and displays no defects in lipid metabolism. Paper_evidence: WBPaper00032449
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Jan 2009 00:00:00
      Automated_description: Expressed in intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T07A9.1:wp261
      T07A9.1a:wp261
    Corresponding_transcript_history: T07A9.1b:wp261
    Corresponding_pseudogene: T07A9.1
    Other_sequence: PPC16406_1
      GRC03897_1
      GR19062
      GR19061
  Experimental_info: Expr_pattern: Expr8601
      Expr1017106
      Expr1038840
      Expr1156306
      Expr2015028
      Expr2033263
    Drives_construct: WBCnstr00013394
    Microarray_results: SMD_T07A9.1
      183853_at
      A_12_P106330
      Aff_T07A9.1
      GPL14144_T07A9.1_508-567_0.943_1_A
      GPL8304_CE_WBGene00020295_A
      GPL8673_T07A9_1P00420
      cea2.i.64202
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053154:human-amyloid-beta_tau_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061081:E.faecalis_downregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:RIH
      WBPaper00061340:URA_parent
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_4
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036286:Pattern_B
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc6390]:oogenesis-enriched
    Interaction (12)
  Map_info: Map: IV Position: -26.2749 Error: 0.01194
    Positive: Positive_clone: T07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032449
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene