WormBase Tree Display for Gene: WBGene00016602

WBGene00016602 SMap: S_parent: Sequence: C43E11
  Identity: Version: 2
    Name: CGC_name: mus-81 Paper_evidence: WBPaper00028727
      Sequence_name: C43E11.2
      Molecular_name: C43E11.2a
        C43E11.2a.1
        CE08680
        C43E11.2b
        CE32609
        C43E11.2b.1
        C43E11.2b.2
        C43E11.2b.3
      Other_name: CELE_C43E11.2 Accession_evidence: NDB BX284601
      Public_name: mus-81
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Dec 2006 12:29:53 WBPerson1847 Name_change: CGC_name: mus-81
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mus
    Allele: WBVar00152929
      WBVar02039580
      WBVar00043451
      WBVar00043456
      WBVar00043461
      WBVar01499919
      WBVar01281752
      WBVar01281753
      WBVar01281756
      WBVar00631349
      WBVar00631350
      WBVar00631351
      WBVar00631352
      WBVar00631353
      WBVar00631354
      WBVar00631355
      WBVar00631356
      WBVar00631357
      WBVar00631358
      WBVar00631359
      WBVar00631360
      WBVar00631361
      WBVar02151302
      WBVar00631362
      WBVar00631363
      WBVar00631364
      WBVar00631365
      WBVar01681418
      WBVar00631366
      WBVar01499786
      WBVar00250898
      WBVar01499985
      WBVar00332172
      WBVar00275006
      WBVar00275007
      WBVar00275008
      WBVar00275009
      WBVar00275010
      WBVar00275011
      WBVar00275012
      WBVar01411505
      WBVar01498959
    Strain: WBStrain00034679
      WBStrain00034681
      WBStrain00034682
      WBStrain00034697
    RNASeq_FPKM (74)
    GO_annotation (42)
    Contained_in_operon: CEOP1168
    Ortholog (35)
    Paralog: WBGene00018923 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enables enzyme binding activity. Involved in several processes, including DNA recombination; larval development; and positive regulation of embryonic development. Predicted to be located in nucleus. Predicted to be part of Holliday junction resolvase complex. Is an ortholog of human MUS81 (MUS81 structure-specific endonuclease subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C43E11.2a
      C43E11.2b
    Corresponding_transcript: C43E11.2a.1
      C43E11.2b.1
      C43E11.2b.2
      C43E11.2b.3
    Other_sequence (13)
    Associated_feature: WBsf217513
      WBsf217514
  Experimental_info: RNAi_result: WBRNAi00042381 Inferred_automatically: RNAi_primary
      WBRNAi00003140 Inferred_automatically: RNAi_primary
      WBRNAi00117051 Inferred_automatically: RNAi_primary
      WBRNAi00029759 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016841
      Expr1037128
      Expr1146370
      Expr2013828
      Expr2032068
    Drives_construct: WBCnstr00027946
    Construct_product: WBCnstr00027946
    Microarray_results (26)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:daf-16(mu86)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051311:VGLN-1-interacting
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056284:ints-11(RNAi)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059763:neuron_expressed
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061340:PVR
      WBPaper00061466:nath-10(icb102)_downregulated
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_4
      cgc4489_group_3
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_19
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_A_Class
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:intrinsic
      [cgc6390]:oogenesis-enriched
    SAGE_tag: SAGE:gttcgagggc Strand: Antisense
      SAGE:ggtctcgttaggaattt Strand: Antisense
      SAGE:gctaatcgaa Strand: Antisense
      SAGE:ggtctcgtta Strand: Antisense
      SAGE:gatggaaatcgatcggc Strand: Antisense
      SAGE:aataaaaaaa Strand: Antisense
      SAGE:gtatccctgc Strand: Sense
        Unambiguously_mapped
      SAGE:gtatccctgctttcata Strand: Sense
        Unambiguously_mapped
    Interaction (37)
  Map_info: Map: I Position: -1.52341 Error: 0.003125
    Positive: Positive_clone: C43E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (25)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene