WormBase Tree Display for Gene: WBGene00012290

WBGene00012290 SMap: S_parent: Sequence: W05H12
  Identity: Version: 2
    Name: Sequence_name: W05H12.2
      Molecular_name: W05H12.2
      Other_name: CELE_W05H12.2 Accession_evidence: NDB BX284601
      Public_name: W05H12.2
    DB_info: Database: AceView gene 1O0
        WormQTL gene WBGene00012290
        WormFlux gene WBGene00012290
        NDB locus_tag CELE_W05H12.2
        NCBI gene 43578490
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Oct 2019 15:24:46 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele: WBVar02121358
      WBVar00350305
      WBVar00350306
      WBVar00685288
      WBVar01352212
      WBVar01499739
      WBVar01499230
      WBVar02066596
      WBVar01434452
      WBVar02122905
      WBVar00542114
      WBVar01499999
      WBVar01890583
      WBVar01476474
      WBVar00160830
      WBVar00160831
      WBVar01850630
      WBVar02120584
    RNASeq_FPKM (74)
    Ortholog: WBGene00031681 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00142818 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00158691 Caenorhabditis brenneri From_analysis: OMA
      WBGene00138967 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00069060 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00069780 Caenorhabditis remanei From_analysis: Inparanoid_8
    Paralog: WBGene00003504 Caenorhabditis elegans From_analysis: Panther
      WBGene00014220 Caenorhabditis elegans From_analysis: Panther
      WBGene00019422 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in several structures, including ABarpapaaa; ABplaaaaaa; head mesodermal cell; neurons; and ventral nerve cord based on tiling array; microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by Psoralens based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: W05H12.2:wp274
    Corresponding_pseudogene: W05H12.2
    Associated_feature: WBsf655326
      WBsf665064
      WBsf985863
      WBsf985864
      WBsf1011071
  Experimental_info: Expr_pattern: Expr1022992
      Expr1035442
      Expr1158381
      Expr2006808
      Expr2025033
    Drives_construct: WBCnstr00030022
    Construct_product: WBCnstr00030022
    Microarray_results: SMD_W05H12.2
      GPL8673_W05H12_2P00317
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040420:FLP_enriched
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045090:RDE-12_dependent
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049635:dop-1(vs100)_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:DA
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061340:RMED
      WBPaper00061340:URA_parent
      WBPaper00061527:bath-38-Y105E8B.7
      WBPaper00062103:neuron_enriched
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
      WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_5
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
  Map_info: Positive: Positive_clone: W05H12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 19.7445
  Method: Gene