WormBase Tree Display for Gene: WBGene00003565

WBGene00003565 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: ncs-3
      Sequence_name: K03E6.3
      Molecular_name: K03E6.3
        K03E6.3.1
        CE30288
      Other_name: CELE_K03E6.3 Accession_evidence: NDB BX284606
      Public_name: ncs-3
    DB_info: Database: AceView gene XB675
        WormQTL gene WBGene00003565
        WormFlux gene WBGene00003565
        NDB locus_tag CELE_K03E6.3
        Panther gene CAEEL|WormBase=WBGene00003565|UniProtKB=Q95ZR9
          family PTHR23055
        NCBI gene 186953
        RefSeq protein NM_075800.6
        TrEMBL UniProtAcc Q95ZR9
        UniProt_GCRP UniProtAcc Q95ZR9
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ncs
    Allele: WBVar01117113
      WBVar01117114
      WBVar01117115
      WBVar01117116
      WBVar01117117
      WBVar01117118
      WBVar01117119
      WBVar01117120
      WBVar01117121
      WBVar01117122
      WBVar01117123
      WBVar01117124
      WBVar01117125
      WBVar01117126
      WBVar01117127
      WBVar01117128
      WBVar01117129
      WBVar01570875
      WBVar01117130
      WBVar01117131
      WBVar01498638
      WBVar01494224
      WBVar01987009
      WBVar01987010
      WBVar00493686
      WBVar00493687
      WBVar00493688
      WBVar00493689
      WBVar00493690
      WBVar00493691
      WBVar00493692
      WBVar00493693
      WBVar01499636
      WBVar00074679
      WBVar00074680
      WBVar01117107
      WBVar01979153
      WBVar01117108
      WBVar01117109
      WBVar01979154
      WBVar01117110
      WBVar01117111
      WBVar01117112
    RNASeq_FPKM (74)
    GO_annotation: 00090197
      00111142
    Ortholog (26)
    Paralog: WBGene00003563 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00003564 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00008998 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015867 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021116 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00008307 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00007710 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: ncs-3 encodes a neuronal calcium sensor (NCS) protein with no obvious null phenotype. Paper_evidence: WBPaper00004225
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K03E6.3
    Corresponding_transcript: K03E6.3.1
    Other_sequence (11)
    Associated_feature: WBsf718499
      WBsf1003929
      WBsf1003930
      WBsf1022204
      WBsf1022205
      WBsf235305
      WBsf235306
  Experimental_info: RNAi_result: WBRNAi00049835 Inferred_automatically: RNAi_primary
      WBRNAi00016546 Inferred_automatically: RNAi_primary
      WBRNAi00033918 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027181
      Expr1153548
      Expr2013912
      Expr2032152
    Drives_construct: WBCnstr00036039
    Construct_product: WBCnstr00036039
    Microarray_results (19)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:bodywall-muscle_CoreEnriched
      WBPaper00037950:bodywall-muscle_embryo_enriched
      WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048988:neuron_expressed
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051021:4-bromodiphenyl-ether_upregulated
      WBPaper00051257:Levamisole_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057143:ztf-11(RNAi)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:DA_DB
      WBPaper00061340:DVC
      WBPaper00061340:mu_int_mu_anal
      WBPaper00061340:mu_sph
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:R07G3.8_9125-ric-4_17408
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062103:neuron_enriched
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:7_0
      WBPaper00065841:7_3
      WBPaper00065841:7_4
      WBPaper00065841:22_0
      WBPaper00065841:38_0
      WBPaper00065841:137_0
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_22
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00034739:N2moreDR1350
      WBPaper00036286:Pattern_I
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040876:mir-35_downregulated
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
    Interaction (14)
  Map_info: Map: X Position: -18.7803
    Positive: Positive_clone: K03E6 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004225
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene