WormBase Tree Display for Expression_cluster: WBPaper00054191:H3.3(null)_embryo_downregulated
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| WBPaper00054191:H3.3(null)_embryo_downregulated | Description | Transcripts that showed significantly decreased expression in H3.3 null mutant animals (FAS43 [his-69&his-70(uge44) III; his-72(tm2066) III; his-74(uge18) V; his-71(ok2289) X]) comparing to in N2 animals at embryo stage. | |
|---|---|---|---|
| Species | Caenorhabditis elegans | ||
| Algorithm | Differentially expressed genes were estimated using a General Linear Model approach, negative binomial distribution, and a quasi-likelihood F-test. Genes with a P-value < 0.05 and fold change > 1 were considered significant. | ||
| Reference | WBPaper00054191 | ||
| Based_on_WB_Release | 235 | ||
| Gene | WBGene00004131 | logFC-emb: -1.9270854294, logCPM-emb: 6.5603279936, p-value-emb: 0.0030524042, p-value_with_FDR-emb: 0.999916596 | |
| WBGene00009691 | logFC-emb: -2.3245355556, logCPM-emb: 4.7187107923, p-value-emb: 0.0011327926, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00014196 | logFC-emb: -2.8535917695, logCPM-emb: -0.1240459726, p-value-emb: 0.0081951635, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00019920 | logFC-emb: -2.0823875607, logCPM-emb: -0.1838172925, p-value-emb: 0.0440815063, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00002018 | logFC-emb: -1.390248206, logCPM-emb: 7.0106569615, p-value-emb: 0.0313180368, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00017681 | logFC-emb: -2.3892136023, logCPM-emb: 3.0974727929, p-value-emb: 0.0041497883, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00007454 | logFC-emb: -2.2289562602, logCPM-emb: -1.0822001599, p-value-emb: 0.0489875432, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00002016 | logFC-emb: -1.3943600318, logCPM-emb: 6.8594525391, p-value-emb: 0.0306565998, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00000725 | logFC-emb: -2.0888118143, logCPM-emb: 0.4680444799, p-value-emb: 0.0364826124, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00001946 | logFC-emb: -10.2463307809, logCPM-emb: 9.6558647161, p-value-emb: 7.48E-32, p-value_with_FDR-emb: 1.02E-27 | ||
| WBGene00009692 | logFC-emb: -2.209691369, logCPM-emb: 4.9906215912, p-value-emb: 0.0015302333, p-value_with_FDR-emb: 0.999916596 | ||
| WBGene00001945 | logFC-emb: -9.7031588848, logCPM-emb: 5.5613113732, p-value-emb: 1.16E-22, p-value_with_FDR-emb: 7.92E-19 | ||
| WBGene00002026 | logFC-emb: -2.636140095, logCPM-emb: 5.1994549413, p-value-emb: 0.0001526946, p-value_with_FDR-emb: 0.4181388118 | ||
| WBGene00016250 | logFC-emb: -1.500973513, logCPM-emb: 8.6239798355, p-value-emb: 0.0142035027, p-value_with_FDR-emb: 0.999916596 | ||
| Attribute_of | RNASeq | ||
| Regulation | Regulated_by_gene | WBGene00001943 | |
| WBGene00001944 | |||
| WBGene00001946 | |||
| WBGene00012276 | |||
| WBGene00001945 | |||
| Associated_with | Life_stage | WBls:0000003 |
