WormBase Tree Display for Gene: WBGene00004131
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| WBGene00004131 | SMap | S_parent | Sequence | F55A12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tent-5 | Person_evidence | WBPerson46847 | |||||
| Sequence_name | F55A12.9 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | pqn-44 | Person_evidence | WBPerson625 | ||||||
| CELE_F55A12.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | tent-5 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 04 Jan 2021 18:23:07 | WBPerson1983 | Name_change | CGC_name | tent-5 | ||||
| Other_name | pqn-44 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tent | ||||||||
| Allele (141) | |||||||||
| Strain | WBStrain00003035 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022009 | ||||||||
| 00022010 | |||||||||
| 00022011 | |||||||||
| 00022012 | |||||||||
| 00112397 | |||||||||
| Ortholog (47) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable poly(A) RNA polymerase activity. Predicted to be involved in mRNA stabilization. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; osteoarthritis; and osteogenesis imperfecta type 18. Is an ortholog of human TENT5A (terminal nucleotidyltransferase 5A); TENT5B (terminal nucleotidyltransferase 5B); and TENT5D (terminal nucleotidyltransferase 5D). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111848 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||||
| DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||||||
| DOID:8398 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||||||
| Molecular_info | Corresponding_CDS | F55A12.9a | |||||||
| F55A12.9b | |||||||||
| F55A12.9c | |||||||||
| F55A12.9d | |||||||||
| F55A12.9e | |||||||||
| Corresponding_transcript | F55A12.9a.1 | ||||||||
| F55A12.9b.1 | |||||||||
| F55A12.9c.1 | |||||||||
| F55A12.9d.1 | |||||||||
| F55A12.9e.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041046 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003779 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116611 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048425 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1248 | ||||||||
| Expr6193 | |||||||||
| Expr1011852 | |||||||||
| Expr1032006 | |||||||||
| Expr1152213 | |||||||||
| Expr2015054 | |||||||||
| Expr2033289 | |||||||||
| Drives_construct | WBCnstr00003535 | ||||||||
| WBCnstr00035677 | |||||||||
| Construct_product | WBCnstr00035677 | ||||||||
| Regulate_expr_cluster | WBPaper00064841:tent-5(tm3504)_downregulated_protein | ||||||||
| WBPaper00064841:tent-5(tm3504)_downregulated_transcript | |||||||||
| WBPaper00064841:tent-5(tm3504)_upregulated_protein | |||||||||
| WBPaper00064841:tent-5(tm3504)_upregulated_transcript | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (283) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | I | Position | -0.030175 | Error | 0.001794 | |||
| Positive | Positive_clone | F55A12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061869 | |||||||||
| WBPaper00063356 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064841 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
