WormBase Tree Display for Gene: WBGene00004131
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WBGene00004131 | SMap | S_parent | Sequence | F55A12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | tent-5 | Person_evidence | WBPerson46847 | |||
Sequence_name | F55A12.9 | ||||||
Molecular_name (15) | |||||||
Other_name | pqn-44 | Person_evidence | WBPerson625 | ||||
CELE_F55A12.9 | Accession_evidence | NDB | BX284601 | ||||
Public_name | tent-5 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tent | ||||||
Allele (141) | |||||||
Strain | WBStrain00003035 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00022009 | ||||||
00022010 | |||||||
00022011 | |||||||
00022012 | |||||||
00112397 | |||||||
Ortholog (47) | |||||||
Paralog (18) | |||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable poly(A) RNA polymerase activity. Predicted to be involved in mRNA stabilization. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; osteoarthritis; and osteogenesis imperfecta type 18. Is an ortholog of human TENT5A (terminal nucleotidyltransferase 5A); TENT5B (terminal nucleotidyltransferase 5B); and TENT5D (terminal nucleotidyltransferase 5D). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111848 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||
DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||||
DOID:8398 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18345) | ||||
Molecular_info | Corresponding_CDS | F55A12.9a | |||||
F55A12.9b | |||||||
F55A12.9c | |||||||
F55A12.9d | |||||||
F55A12.9e | |||||||
Corresponding_transcript | F55A12.9a.1 | ||||||
F55A12.9b.1 | |||||||
F55A12.9c.1 | |||||||
F55A12.9d.1 | |||||||
F55A12.9e.1 | |||||||
Other_sequence (32) | |||||||
Associated_feature (15) | |||||||
Experimental_info | RNAi_result | WBRNAi00041046 | Inferred_automatically | RNAi_primary | |||
WBRNAi00003779 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048424 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00116611 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048425 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1248 | ||||||
Expr6193 | |||||||
Expr1011852 | |||||||
Expr1032006 | |||||||
Expr1152213 | |||||||
Expr2015054 | |||||||
Expr2033289 | |||||||
Drives_construct | WBCnstr00003535 | ||||||
WBCnstr00035677 | |||||||
Construct_product | WBCnstr00035677 | ||||||
Regulate_expr_cluster | WBPaper00064841:tent-5(tm3504)_downregulated_protein | ||||||
WBPaper00064841:tent-5(tm3504)_downregulated_transcript | |||||||
WBPaper00064841:tent-5(tm3504)_upregulated_protein | |||||||
WBPaper00064841:tent-5(tm3504)_upregulated_transcript | |||||||
Microarray_results (40) | |||||||
Expression_cluster (283) | |||||||
Interaction (26) | |||||||
Map_info | Map | I | Position | -0.030175 | Error | 0.001794 | |
Positive | Positive_clone | F55A12 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00055090 | |||||||
WBPaper00061869 | |||||||
WBPaper00063356 | |||||||
WBPaper00064339 | |||||||
WBPaper00064841 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |