WormBase Tree Display for Gene: WBGene00001945
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| WBGene00001945 | SMap | S_parent | Sequence | F45E1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-71 | Person_evidence | WBPerson160 | |||||
| Sequence_name | F45E1.6 | ||||||||
| Molecular_name | F45E1.6 | ||||||||
| F45E1.6.1 | |||||||||
| CE01943 | |||||||||
| Other_name | CELE_F45E1.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | his-71 | ||||||||
| DB_info | Database | AceView | gene | XI600 | |||||
| WormQTL | gene | WBGene00001945 | |||||||
| WormFlux | gene | WBGene00001945 | |||||||
| NDB | locus_tag | CELE_F45E1.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001945|UniProtKB=Q10453 | |||||||
| family | PTHR11426 | ||||||||
| NCBI | gene | 181057 | |||||||
| RefSeq | protein | NM_076943.7 | |||||||
| SwissProt | UniProtAcc | Q10453 | |||||||
| UniProt_GCRP | UniProtAcc | Q10453 | |||||||
| OMIM | gene | 601058 | |||||||
| 601128 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele (20) | |||||||||
| Possibly_affected_by | WBVar02153220 | ||||||||
| Strain | WBStrain00032472 | ||||||||
| WBStrain00007466 | |||||||||
| WBStrain00007461 | |||||||||
| WBStrain00034735 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (59) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | his-71 encodes an H3 histone required for embryonic viability, body morphology, and larval viability. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be located in nucleus. Predicted to be part of nucleosome. Expressed in several structures, including somatic cell. Is an ortholog of human H3-3A (H3.3 histone A) and H3-3B (H3.3 histone B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0031200 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4764,HGNC:4765) | ||||
| Molecular_info | Corresponding_CDS | F45E1.6 | |||||||
| Corresponding_transcript | F45E1.6.1 | ||||||||
| Other_sequence (183) | |||||||||
| Associated_feature | WBsf1006004 | ||||||||
| WBsf1006005 | |||||||||
| WBsf1006006 | |||||||||
| WBsf1023340 | |||||||||
| WBsf237632 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr4220 | ||||||||
| Expr4296 | |||||||||
| Expr6076 | |||||||||
| Expr15136 | |||||||||
| Expr1015060 | |||||||||
| Expr1151237 | |||||||||
| Expr1200188 | |||||||||
| Expr2012481 | |||||||||
| Expr2030720 | |||||||||
| Drives_construct | WBCnstr00002895 | ||||||||
| WBCnstr00011836 | |||||||||
| WBCnstr00011893 | |||||||||
| WBCnstr00016936 | |||||||||
| WBCnstr00036571 | |||||||||
| Construct_product | WBCnstr00011836 | ||||||||
| WBCnstr00016936 | |||||||||
| WBCnstr00036571 | |||||||||
| Regulate_expr_cluster | WBPaper00054191:H3.3(null)_embryo_downregulated | ||||||||
| WBPaper00054191:H3.3(null)_embryo_upregulated | |||||||||
| WBPaper00054191:H3.3(null)_L1_downregulated | |||||||||
| WBPaper00054191:H3.3(null)_L1_upregulated | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (198) | |||||||||
| Interaction (212) | |||||||||
| Map_info | Map | X | Position | -0.766026 | Error | 0.018254 | |||
| Positive | Positive_clone | F45E1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5256 | |||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection corrected from F54E1.6 [krb 030423] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
