WormBase Tree Display for CDS: C29E4.3a
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| C29E4.3a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C29E4 | |||
| Structure | Source_exons (11) | |||||
| DB_info | Database | SwissProt | UniProtAcc | P34342 | ||
| UniProtIsoformAcc | P34342-1 | |||||
| UniProt | UniProtAcc | P34342 | ||||
| UniProt_GCRP | UniProtAcc | P34342 | ||||
| AlphaFold | entry | P34342 | ||||
| NCBI_protein | GI_number | GI:351058542 | ||||
| TREEFAM | TREEFAM_ID | TF318283 | ||||
| Protein_id | CHROMOSOME_III | CCD66004 | 1 | |||
| DB_remark | RAN-2 protein; contains similarity to Pfam domain PF13516 (Leucine Rich repeat); contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR027038 (Ran GTPase-activating protein), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ816660 | |||
| Visible | Gene | WBGene00004303 | ||||
| Corresponding_transcript | C29E4.3a.1 | |||||
| Corresponding_protein | CE37483 | |||||
| Corresponding_PCR_product | TH:302a9 | |||||
| cenix:302-a9 | ||||||
| mv_C29E4.3.v5 | ||||||
| sjj2_C29E4.3a | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_148853 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_154214 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_265 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_32378 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_46147 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_89158 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_122129 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_91356 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_11749 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_250 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_18372 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_53230 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_72228 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_14791 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_45171 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_11788 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_27391 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_40255 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_17653 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_13064 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_8212 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_70160 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_18272 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_101777 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_28643 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_27468 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_197 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_252 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_36239 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_17471 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_39179 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_54730 | ||||||
| L1_Nanopore_Roach_27784 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_100447 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_70455 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_211682 | Inferred_automatically | transcript_builder.pl | ||||
| yk1740f12.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_55981 | Inferred_automatically | transcript_builder.pl | ||||
| yk448g5.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_155171 | Inferred_automatically | transcript_builder.pl | ||||
| yk1624g05.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1742g07.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk448g5.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_127362 | Inferred_automatically | transcript_builder.pl | ||||
| yk1722g10.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_320767 | Inferred_automatically | transcript_builder.pl | ||||
| yk1742g07.3 | Inferred_automatically | transcript_builder.pl | ||||
| FN907777 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6643|c15_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_20143 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_314241 | Inferred_automatically | transcript_builder.pl | ||||
| yk1624g05.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_370592 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_239529 | Inferred_automatically | transcript_builder.pl | ||||
| yk349f12.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_342754 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_34753 | Inferred_automatically | transcript_builder.pl | ||||
| EC016317 | Inferred_automatically | transcript_builder.pl | ||||
| yk1304h02.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk751b06.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk214d4.3 | Inferred_automatically | transcript_builder.pl | ||||
| EC017252 | Inferred_automatically | transcript_builder.pl | ||||
| yk10h11.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_18463 | Inferred_automatically | transcript_builder.pl | ||||
| yk751b06.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1257d10.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_115361 | Inferred_automatically | transcript_builder.pl | ||||
| yk23h9.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_35859 | Inferred_automatically | transcript_builder.pl | ||||
| yk597c12.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk466c11.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk470d11.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_60493 | Inferred_automatically | transcript_builder.pl | ||||
| yk227a5.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1378a05.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk348g3.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_16558 | Inferred_automatically | transcript_builder.pl | ||||
| yk470d11.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1257d10.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_219639 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_207106 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_41875 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_54891 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_66528 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00085739 | |||||
| WBRNAi00062934 | ||||||
| WBRNAi00062949 | ||||||
| WBRNAi00001007 | ||||||
| WBRNAi00041448 | ||||||
| WBRNAi00086891 | ||||||
| WBRNAi00062955 | ||||||
| WBRNAi00002456 | ||||||
| WBRNAi00062942 | ||||||
| WBRNAi00065354 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Ran GTPase-activating protein 2 | Accession_evidence | UniProt | SP:P34342 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 10 Sep 2004 00:00:00 | WBPerson1867 | ||||
| Remark | split C29E4.10 off this 99-12-20 | |||||
| [991220 db] split C29E4.3 into .3 and .10 based on EST data | Curator_confirmed | WBPerson1848 | ||||
| [011011 db] truncated C-terminus based on EST data | Curator_confirmed | WBPerson1848 | ||||
| [20040910 po] added a 5' exon based on EST data(yk1624g05.5) | Curator_confirmed | WBPerson1867 | ||||
| WBPerson1848 | ||||||
| Method | curated |
