WormBase Tree Display for CDS: Y55F3C.3d
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| Y55F3C.3d | Evidence | Curator_confirmed | WBPerson4025 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | Y55F3C | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | U4PR20 | ||
| UniProt | UniProtAcc | U4PR20 | ||||
| AlphaFold | entry | U4PR20 | ||||
| NCBI_protein | GI_number | GI:548932238 | ||||
| Protein_id | CHROMOSOME_IV | CDH93029 | 1 | |||
| DB_remark | KVS-5 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF02214 (BTB/POZ domain); contains similarity to Interpro domains IPR003971 (Potassium channel, voltage dependent, Kv9), IPR003968 (Potassium channel, voltage dependent, Kv), IPR005821 (Ion transport domain), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR027359 (Voltage-dependent channel domain superfamily), IPR003131 (Potassium channel tetramerisation-type BTB domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Feature_evidence | WBsf128457 | |||||
| Visible | Gene | WBGene00021948 | ||||
| Corresponding_transcript | Y55F3C.3d.1 | |||||
| Corresponding_protein | CE48745 | |||||
| Corresponding_PCR_product | cenix:144-b8 | |||||
| mv_Y55F3C.f | ||||||
| sjj_Y55F3C.f | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_18293 | |||||
| male_Nanopore_Roach_18861 | ||||||
| L1_Nanopore_Roach_15749 | ||||||
| L1_Nanopore_Roach_37882 | ||||||
| L2_Nanopore_Roach_4295 | ||||||
| L2_Nanopore_Roach_16591 | ||||||
| L3_Nanopore_Roach_16248 | ||||||
| RNAi_result | WBRNAi00002374 | |||||
| WBRNAi00057555 | ||||||
| WBRNAi00021057 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | BTB domain-containing protein | Accession_evidence | UniProt | TR:U4PR20 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [130819 gw3] Autoconversion from AG1201_Y55F3C.3.T2. Created this isoform based on the Sl1 site and the RNASeq intron splice data. | Curator_confirmed | WBPerson4025 | |||
| Feature_evidence | WBsf128457 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
