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WormBase Tree Display for Gene: WBGene00021948

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Name Class

WBGene00021948SMapS_parentSequenceY55F3C
IdentityVersion3
NameCGC_namekvs-5Person_evidenceWBPerson260
WBPerson145
Sequence_nameY55F3C.3
Molecular_name (18)
Other_nameY55F3C.fCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y55F3C.eCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y55F3C.3Accession_evidenceNDBBX284604
Public_namekvs-5
DB_infoDatabaseAceViewgene4B505
WormQTLgeneWBGene00021948
WormFluxgeneWBGene00021948
NDBlocus_tagCELE_Y55F3C.3
PanthergeneCAEEL|WormBase=WBGene00021948|UniProtKB=U4PLR3
familyPTHR11537
NCBIgene176899
RefSeqproteinNM_067577.8
NM_001307395.4
NM_001307396.4
NM_001307394.3
NM_001307393.3
NM_001307392.3
TrEMBLUniProtAccU4PE60
U4PR20
U4PBB7
U4PAX5
Q95XV8
U4PLR3
UniProt_GCRPUniProtAccU4PLR3
OMIMgene600397
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Jul 2011 16:30:08WBPerson2970Name_changeCGC_namekvs-5
304 Sep 2013 14:28:38WBPerson4025EventAcquires_mergeWBGene00043706
Acquires_mergeWBGene00043706
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classkvs
Allele (372)
StrainWBStrain00007651
RNASeq_FPKM (74)
GO_annotation (21)
Ortholog (49)
Paralog (13)
Structured_descriptionAutomated_descriptionPredicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 26. Is an ortholog of human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Disease_infoPotential_modelDOID:0080461Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:6231)
DOID:1826Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:6231)
Molecular_infoCorresponding_CDSY55F3C.3a
Y55F3C.3c
Y55F3C.3d
Y55F3C.3e
Y55F3C.3f
Y55F3C.3g
Corresponding_CDS_historyY55F3C.3:wp175
Y55F3C.3b:wp274
Corresponding_transcriptY55F3C.3a.1
Y55F3C.3c.1
Y55F3C.3d.1
Y55F3C.3e.1
Y55F3C.3f.1
Y55F3C.3g.1
Other_sequence (19)
Associated_feature (27)
Experimental_infoRNAi_resultWBRNAi00021056Inferred_automaticallyRNAi_primary
WBRNAi00002374Inferred_automaticallyRNAi_primary
WBRNAi00057555Inferred_automaticallyRNAi_primary
WBRNAi00021057Inferred_automaticallyRNAi_primary
Expr_patternExpr9462
Expr1016026
Expr1017500
Expr1039655
Expr1160988
Expr1160989
Expr2012988
Expr2031220
Drives_constructWBCnstr00024396
Construct_productWBCnstr00014027
WBCnstr00024396
Microarray_results (44)
Expression_cluster (172)
InteractionWBInteraction000112836
WBInteraction000112839
WBInteraction000112840
WBInteraction000162561
WBInteraction000167519
WBInteraction000170122
WBInteraction000293558
WBInteraction000469834
WBInteraction000472696
Map_infoMapIVPosition-23.571Error0.008513
PositivePositive_cloneY55F3CInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038444
WBPaper00038491
WBPaper00055090
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene