WormBase Tree Display for Variation: WBVar02153599

WBVar02153599 Name: Public_name: gk5045
    Other_name: F26B1.2b.3:c.-26_*889del
      F26B1.2b.2:c.-26_*880del
      CE09674:p.Ile9ArgfsTer20
      F26B1.2a.1:c.26_1179del
      F26B1.2d.2:c.-26_*1194del
    HGVSg: CHROMOSOME_I:g.6317742_6319717del
  Sequence_details: SMap: S_parent: Sequence: F26B1
    Flanking_sequences: TCAAAATGATGATCAAAGTGGGAGCCGCTA GGTGGATCTGTCTAGGTTCTGGTGTTCGTA
    Mapping_target: CHROMOSOME_I
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037915
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00017816
    Transcript: F26B1.2d.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F26B1.2d.2:c.-26_*1194del
        cDNA_position: 46-1481
        Intron_number: 1-7/7
        Exon_number: 1-8/8
      F26B1.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1087
        Intron_number: 2-7/7
        Exon_number: 1-8/8
      F26B1.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1131
        CDS_position: ?-1128
        Protein_position: ?-376
        Intron_number: 2-7/8
        Exon_number: 1-8/9
      F26B1.2d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1404
        Intron_number: 2-6/6
        Exon_number: 1-7/7
      F26B1.2b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F26B1.2b.2:c.-26_*880del
        cDNA_position: 44-1153
        Intron_number: 1-8/8
        Exon_number: 1-9/9
      F26B1.2e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 26-?
        CDS_position: 26-?
        Protein_position: 9-?
        Intron_number: 1-3/3
        Exon_number: 1-4/4
      F26B1.2b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F26B1.2b.3:c.-26_*889del
        cDNA_position: 44-1162
        Intron_number: 1-8/8
        Exon_number: 1-9/9
      F26B1.2a.1 (11)
      F26B1.2b.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1110
        Intron_number: 2-7/7
        Exon_number: 1-8/8
  Isolation: Mutagen: CRISPR_Cas9
  Genetics: Interpolated_map_position: I 0.982616
  Remark: Batch created from Strain genotype data Curator_confirmed: WBPerson1983
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is perfect, but it was not sequenced.
  Method: Deletion_allele