WormBase Tree Display for Variation: WBVar02151741

WBVar02151741 Name: Public_name: tm11407
    HGVSg: CHROMOSOME_V:g.19283506_19293206del
  Sequence_details: SMap: S_parent: Sequence: F55C9
    Flanking_sequences: gaaaaatctggaaacttctagaaaaatgtagaaactt tagaactttctagaaaaatttggaaagttc
    Mapping_target: F55C9
    Source_location: 7 CHROMOSOME_V 19283505 19293207 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11407_external
      tm11407_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11407
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00010100
      WBGene00010101
      WBGene00010099
      WBGene00010102
      WBGene00044196
    Transcript: F55C9.3.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/4
        Exon_number: 1-5/5
      F55C9.5.3 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/5
        Exon_number: 1-6/6
      F55C9.5.4 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-5/5
      F55C9.1.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/3
        Exon_number: 3-4/4
      F55C9.5.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2/3
        Exon_number: 1-4/4
      F55C9.4.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
      F55C9.5.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-5/5
      F55C9.5.5 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/5
        Exon_number: 1-6/6
      F55C9.3.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/4
        Exon_number: 1-5/5
    Pseudogene: F55C9.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-2/2
        Exon_number: 1-3/3
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Remark: 3609/3610-13310/13311 (9701 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele