WormBase Tree Display for Variation: WBVar02133024
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| WBVar02133024 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h14396 | ||||
| Other_name | CE28120:p.Leu13= | |||||
| Y39E4B.12a.2:c.39C>T | ||||||
| Y39E4B.12b.2:c.39C>T | ||||||
| CE28119:p.Leu13= | ||||||
| Y39E4B.12b.1:c.39C>T | ||||||
| CE24240:p.Leu13= | ||||||
| Y39E4B.12a.1:c.39C>T | ||||||
| Y39E4B.12c.1:c.39C>T | ||||||
| Y39E4B.12c.2:c.39C>T | ||||||
| HGVSg | CHROMOSOME_III:g.13188174C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | Y39E4B | ||
| Flanking_sequences | AAATGATTATATTCAAGAAAAAGGCGATATTAAAAGTTCT | CTCTTGGTTCCAGTTTTTTGGATTTGCTCGTTGATTTTTT | ||||
| Mapping_target | CHROMOSOME_III | |||||
| Source_location | 200 | CHROMOSOME_III | 13188055 | 13188055 | ||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023861 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00001630 | ||||
| Transcript | Y39E4B.12b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12b.1:c.39C>T | |||||
| HGVSp | CE28119:p.Leu13= | |||||
| cDNA_position | 124 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 3/13 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Y39E4B.12a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12a.1:c.39C>T | |||||
| HGVSp | CE24240:p.Leu13= | |||||
| cDNA_position | 124 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 3/13 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Y39E4B.12c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12c.1:c.39C>T | |||||
| HGVSp | CE28120:p.Leu13= | |||||
| cDNA_position | 126 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 3/13 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Y39E4B.12a.2 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12a.2:c.39C>T | |||||
| HGVSp | CE24240:p.Leu13= | |||||
| cDNA_position | 73 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 2/12 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Y39E4B.12c.2 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12c.2:c.39C>T | |||||
| HGVSp | CE28120:p.Leu13= | |||||
| cDNA_position | 72 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 2/12 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Y39E4B.12b.2 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | Y39E4B.12b.2:c.39C>T | |||||
| HGVSp | CE28119:p.Leu13= | |||||
| cDNA_position | 67 | |||||
| CDS_position | 39 | |||||
| Protein_position | 13 | |||||
| Exon_number | 2/12 | |||||
| Codon_change | ctC/ctT | |||||
| Amino_acid_change | L | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
