WormBase Tree Display for Variation: WBVar00248014

WBVar00248014 Name: Public_name: WBVar00248014
    Other_name (12)
    HGVSg: CHROMOSOME_III:g.2747582A>T
  Sequence_details: SMap: S_parent: Sequence: Y71H2AM
    Flanking_sequences: acattggagcaacctttaccacatt gaactggtagccgctagttggaggg
    Mapping_target: Y71H2AM
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_Yanai
          Million_mutation_project_reanalysis
      WBStrain00006625 From_analysis: Million_mutation_project_reanalysis
      WBStrain00008273 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022850 From_analysis: WGS_De_Bono
          Million_mutation_project_reanalysis
      WBStrain00022886 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022930 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023138 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023191 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027652 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01328671
        WBVar00561940
    Status: Live
  Affects: Gene: WBGene00022180
      WBGene00022170
    Transcript: Y71H2AM.15c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71H2AM.15c.1:c.2004T>A
        HGVSp: CE54581:p.Ser668=
        cDNA_position: 2004
        CDS_position: 2004
        Protein_position: 668
        Exon_number: 9/10
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71H2AM.5.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y71H2AM.5.2:c.-4-38618A>T
        Intron_number: 1/5
      Y71H2AM.15b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71H2AM.15b.1:c.2154T>A
        HGVSp: CE39069:p.Ser718=
        cDNA_position: 2154
        CDS_position: 2154
        Protein_position: 718
        Exon_number: 12/13
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71H2AM.15d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71H2AM.15d.1:c.1992T>A
        HGVSp: CE54567:p.Ser664=
        cDNA_position: 1992
        CDS_position: 1992
        Protein_position: 664
        Exon_number: 11/11
        Codon_change: tcT/tcA
        Amino_acid_change: S
      Y71H2AM.15a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y71H2AM.15a.1:c.2166T>A
        HGVSp: CE46193:p.Ser722=
        cDNA_position: 2166
        CDS_position: 2166
        Protein_position: 722
        Exon_number: 10/11
        Codon_change: tcT/tcA
        Amino_acid_change: S
  Reference: WBPaper00038208
    WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9328 VarS=AT
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_Y71H2AM.3
    [20040130 db] this Allele was previously named snp_Y71H2AM.3
    [20090224 db] original Wicks name : Y71H2AM:55750..56705@505 Psnp=0.9328 VarS=AT
    [20090224 db] original Wicks id : eam69c06.s1@439,t,47
  Method: SNP_Wicks