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WormBase Tree Display for Variation: WBVar00247079

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Name Class

WBVar00247079EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247079
Other_namesnp_Y39E4B[4]
cewivar00199842
Y39E4B.6b.1:c.525+379C>G
Y39E4B.6a.1:c.525+379C>G
HGVSgCHROMOSOME_III:g.13072617C>G
Sequence_detailsSMapS_parentSequenceY39E4B
Flanking_sequencesagtgcttgtgtcgatttacgggctcattttttaaattaattaattgattt
Mapping_targetY39E4B
Type_of_mutationSubstitutionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00022899From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00012717
TranscriptY39E4B.6a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.6a.1:c.525+379C>G
Intron_number4/5
Y39E4B.6b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.6b.1:c.525+379C>G
Intron_number4/5
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=CG
Enzymes. Bristol-specific: [AspNI,BcrI,BsaEI,BscBI,Bsp29I,BspLI,BssI,HpyF44II,HpyF73I,NgoBV,NgoGV,NlaIV,PspN4I,Rlu3I,Uba1305I,Uba1445I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y39E4B.4
[20040130 db] this Allele was previously named snp_Y39E4B.4
[20090224 db] original Wicks name : Y39E4B:5092..6056@129 Psnp=0.8806 VarS=CG
[20090224 db] original Wicks id : eam44b03.s2@57,g,39
[20090224 db] Snip-SNP
MethodSNP_Wicks