WormBase Tree Display for Variation: WBVar00247079
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WBVar00247079 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247079 | |||
Other_name | snp_Y39E4B[4] | ||||
cewivar00199842 | |||||
Y39E4B.6b.1:c.525+379C>G | |||||
Y39E4B.6a.1:c.525+379C>G | |||||
HGVSg | CHROMOSOME_III:g.13072617C>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y39E4B | |
Flanking_sequences | agtgcttgtgtcgatttacgggctc | attttttaaattaattaattgattt | |||
Mapping_target | Y39E4B | ||||
Type_of_mutation | Substitution | C | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00012717 | |||
Transcript | Y39E4B.6a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y39E4B.6a.1:c.525+379C>G | ||||
Intron_number | 4/5 | ||||
Y39E4B.6b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39E4B.6b.1:c.525+379C>G | ||||
Intron_number | 4/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8806 VarS=CG | ||||
Enzymes. Bristol-specific: [AspNI,BcrI,BsaEI,BscBI,Bsp29I,BspLI,BssI,HpyF44II,HpyF73I,NgoBV,NgoGV,NlaIV,PspN4I,Rlu3I,Uba1305I,Uba1445I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y39E4B.4 | |||||
[20040130 db] this Allele was previously named snp_Y39E4B.4 | |||||
[20090224 db] original Wicks name : Y39E4B:5092..6056@129 Psnp=0.8806 VarS=CG | |||||
[20090224 db] original Wicks id : eam44b03.s2@57,g,39 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |