WormBase Tree Display for Variation: WBVar00243949

WBVar00243949 Name: Public_name: WBVar00243949
    Other_name: snp_D2089[5]
      cewivar00185947
      D2089.5.1:c.177C>T
      CE00940:p.Pro59=
    HGVSg: CHROMOSOME_II:g.10692599G>A
  Sequence_details: SMap: S_parent: Sequence: D2089
    Flanking_sequences: ttgtcagcttacgagcagtcattgc gggctaattgtgtaggttgatggat
    Mapping_target: D2089
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          Million_mutation_project_reanalysis
      WBStrain00024204 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: SNP_Wicks
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01376015
    Status: Live
  Affects: Gene: WBGene00001522
    Transcript: D2089.5.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: D2089.5.1:c.177C>T
        HGVSp: CE00940:p.Pro59=
        cDNA_position: 193
        CDS_position: 177
        Protein_position: 59
        Exon_number: 4/9
        Codon_change: ccC/ccT
        Amino_acid_change: P
  Reference: WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.8806 VarS=AG
    Enzymes. Bristol-specific: [AciI,BstFZ438I,FauI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_D2089.5
    [20040130 db] this Allele was previously named snp_D2089.5
    [20090224 db] original Wicks name : D2089:30669..33209@2227 Psnp=0.8806 VarS=AG
    [20090224 db] original Wicks id : eam48b11.s1@584,a,39
    [20090224 db] Snip-SNP
  Method: SNP_Wicks