WormBase Tree Display for Variation: WBVar00182581
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| WBVar00182581 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00182581 | |||
| Other_name | haw49857 | ||||
| cewivar00154000 | |||||
| Y39E4B.12c.1:c.1345-587A>T | |||||
| Y39E4B.12a.2:c.1345-587A>T | |||||
| Y39E4B.12a.1:c.1345-587A>T | |||||
| Y39E4B.12b.2:c.1345-587A>T | |||||
| Y39E4B.12b.1:c.1345-587A>T | |||||
| Y39E4B.12c.2:c.1345-587A>T | |||||
| HGVSg | CHROMOSOME_III:g.13197023A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y39E4B | |
| Flanking_sequences | ttatttgtaaaatatgatttttttt | aagttggaagtacagcaaggagatt | |||
| Mapping_target | Y39E4B | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01339178 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00001630 | |||
| Transcript | Y39E4B.12b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12b.1:c.1345-587A>T | ||||
| Intron_number | 8/12 | ||||
| Y39E4B.12a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12a.1:c.1345-587A>T | ||||
| Intron_number | 8/12 | ||||
| Y39E4B.12c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12c.1:c.1345-587A>T | ||||
| Intron_number | 8/12 | ||||
| Y39E4B.12a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12a.2:c.1345-587A>T | ||||
| Intron_number | 7/11 | ||||
| Y39E4B.12c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12c.2:c.1345-587A>T | ||||
| Intron_number | 7/11 | ||||
| Y39E4B.12b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39E4B.12b.2:c.1345-587A>T | ||||
| Intron_number | 7/11 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw49857 | ||||
| Method | WGS_Hawaiian_Waterston |
