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WormBase Tree Display for Variation: WBVar00182578

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Name Class

WBVar00182578EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar00182578
Other_namepas34082
haw49854
cewivar00029830
Y39E4B.12a.2:c.491+19C>G
Y39E4B.12c.2:c.491+19C>G
Y39E4B.12c.1:c.491+19C>G
Y39E4B.12a.1:c.491+19C>G
Y39E4B.12b.2:c.491+19C>G
Y39E4B.12b.1:c.491+19C>G
HGVSgCHROMOSOME_III:g.13190265C>G
Sequence_detailsSMapS_parentSequenceY39E4B
Flanking_sequencesatgctgagtgggtttttttttattcaaaattcataaaaatcgaaaaatta
Mapping_targetY39E4B
Type_of_mutationSubstitutionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (26)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson6900
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar01339170
WBVar00222306
WBVar01274018
StatusLive
AffectsGeneWBGene00001630
TranscriptY39E4B.12b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12b.1:c.491+19C>G
Intron_number5/12
Y39E4B.12a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12a.1:c.491+19C>G
Intron_number5/12
Y39E4B.12c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12c.1:c.491+19C>G
Intron_number5/12
Y39E4B.12a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12a.2:c.491+19C>G
Intron_number4/11
Y39E4B.12c.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12c.2:c.491+19C>G
Intron_number4/11
Y39E4B.12b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.12b.2:c.491+19C>G
Intron_number4/11
ReferenceWBPaper00037807
Remark[20081124 db] this Variation was previously named hw49854
MethodWGS_Hawaiian_Waterston