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WormBase Tree Display for Variation: WBVar00145853

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Name Class

WBVar00145853EvidencePaper_evidenceWBPaper00035654
NamePublic_namegk448
HGVSgCHROMOSOME_III:g.13771453_13771807del
Sequence_detailsSMapS_parentSequenceK08E3
Flanking_sequencescaaggcctcgactagttttttgaatttaatttacttatataaataactggaattgttatt
Mapping_targetK08E3
Type_of_mutationDeletion
PCR_productgk448_external
gk448_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00036256
Component_of_genotypeWBGenotype00000134
WBGenotype00000135
LaboratoryVC
PersonWBPerson427
KO_consortium_allele
StatusLive
AffectsGeneWBGene00003967
TranscriptK08E3.7b.2VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/6
Exon_number1-3/7
K08E3.7a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/8
Exon_number1-3/9
K08E3.7c.1VEP_consequencesplice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1/5
Exon_number1/6
K08E3.7b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/7
Exon_number1-3/8
InteractorWBInteraction000524464
WBInteraction000524466
WBInteraction000524468
WBInteraction000532904
IsolationMutagenTMP/UV
DescriptionPhenotype (7)
Phenotype_not_observedWBPhenotype:0000140Paper_evidenceWBPaper00041209
Curator_confirmedWBPerson712
Remarkdid not significantly exacerbate L3 arrest at any time pointPaper_evidenceWBPaper00041209
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003513Paper_evidenceWBPaper00041209
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000035PATO:0000460Paper_evidenceWBPaper00041209
Curator_confirmedWBPerson712
Phenotype_assayTreatmentserial ultraviolet C radiation(UVC) exposure (10 J/m2)Paper_evidenceWBPaper00041209
Curator_confirmedWBPerson712
Disease_infoModifies_diseaseDOID:700
Modifies_disease_in_annotationWBDOannot00001294
ReferenceWBPaper00041209
WBPaper00035654
WBPaper00044740
WBPaper00047030
WBPaper00064979
WBPaper00064562
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele