WormBase Tree Display for Variation: WBVar00144894

WBVar00144894 Evidence: Paper_evidence: WBPaper00003390
  Name: Public_name: e2643
    Other_name: T07D1.4a.3:c.439+31_*17del
      T07D1.4a.4:c.439+31_*17del
      T07D1.4a.2:c.439+31_*17del
      T07D1.4a.1:c.439+31_*17del
    HGVSg: CHROMOSOME_X:g.2446058_2447312del
  Sequence_details: SMap: S_parent: Sequence: T07D1
    Flanking_sequences: gtaagccttgccctccttttctcttcccga taaacgatattcaattcctgacctcacttt
    Mapping_target: T07D1
    Type_of_mutation: Deletion: tatatacaaaatcgcaactttcttgagttttattcgtgctgttctcttttacatcttttatattcaacgtcttgaatttgcatggaaaaacggtttctttctgaactgtgacaaagattaaaacagtgattaacacgcaaattggcattatttgtatcatctttatttttctcttgtcatcaaagttaattcacacgtaaccaaggtagtgcaaacggtgtagagtttttttgcttgccactgaatgattcaaaaaaagaaagatgataaagtcggcctagacggaatctaacatcacaaaaattcaaccaaattataatttttttcagccggacccgatggaccaaaaagacttcacgtatcgaatatcccattcagattcagagacccagacctcaaaacgatgtttgagaaatttggtgtggtttccgacgtagaaattattttcaatgagcgaggatcaaaggtgagtacaataacactagaaaggaactgagctcatataaacatttatatttcaggggtttggatttgtgacaatggagagaccgcaggatgctgagagagctagacaagagcttcatggatcaatgattgaaggacggaaaattgaagtcaactgcgctacagctcgtgttcactcgaagaaagttaaaccaactggaggtaaactagtcaataaccattgccaaacaaaatttatttatttaggaatcctggaccaaatgaacccactgatggcccaatcagctcttgccgcacaggctcagatgaacagagccctattgctccgtagtccattggtagcacaatctcttcttggtcgcggagccgctttaatccccggaatgcaacagcccgcgttccaattgcaagcggctttggctggcaatccgctggcacaacttcaaggtcaacctttgctgttcaacgctgcagcccttcaaacgaacgcactccaacagtcggcgtttggaatggatccggccgccgttcaagctgctctgcttgccaatgagcaagctcggtttcaactcgctgctgccgctgctcaaggtaacgagtacattatgtaccatcaagccaaacaacaagaattaccaggacggatcccatcatctggaaatgcctcggcgtttggcgaacaataccttagcaacgcgttggccaccgcctcactcccctcatatcaaatgaacccggcgcttagaacgttaaatcgatttactccgtattgagtggccccccgttttgg Paper_evidence: WBPaper00003390
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004643
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00001484
      WBGene00196888
    Transcript: T07D1.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 4-7/7
        Exon_number: 5-8/8
      T07D1.4a.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T07D1.4a.3:c.439+31_*17del
        cDNA_position: ?-1414
        Intron_number: 5-8/9
        Exon_number: 6-10/10
      T07D1.9 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T07D1.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-5/5
        Exon_number: 3-6/6
      T07D1.4a.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T07D1.4a.4:c.439+31_*17del
        cDNA_position: ?-1292
        Intron_number: 5-8/9
        Exon_number: 6-10/10
      T07D1.4a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T07D1.4a.2:c.439+31_*17del
        cDNA_position: ?-1326
        Intron_number: 5-8/9
        Exon_number: 6-10/10
      T07D1.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T07D1.4a.1:c.439+31_*17del
        cDNA_position: ?-1226
        Intron_number: 4-7/8
        Exon_number: 5-9/9
    Interactor: WBInteraction000502674
  Genetics: Interpolated_map_position: X -15.4567
  Description: Phenotype_not_observed: WBPhenotype:0001175 Paper_evidence: WBPaper00048917
        Curator_confirmed: WBPerson721
  Reference: WBPaper00003390
    WBPaper00048917
  Remark: Imprecise excision of Tc1 insertion Paper_evidence: WBPaper00003390
  Method: Deletion_allele