WormBase Tree Display for Variation: WBVar00143592

WBVar00143592 Name: Public_name: e912
    Other_name: F59G1.4a.1:c.250-263_947-68del
    HGVSg: CHROMOSOME_II:g.5896964_5902373del
  Sequence_details: SMap: S_parent: Sequence: F59G1
    Flanking_sequences: aggaaggaacaagtcgatcggaaaatttta ttttcacactgggagctagttccaataaaa
    Mapping_target: F59G1
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004403
      WBStrain00006311
      WBStrain00026764
      WBStrain00026863
      WBStrain00027055
      WBStrain00027229
      WBStrain00027586
      WBStrain00040213
      WBStrain00040275
      WBStrain00051497
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00002993
      WBGene00198855
      WBGene00199631
      WBGene00197123
      WBGene00019128
    Transcript: F59G1.6
      F59G1.13 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F59G1.10 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F59G1.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59G1.4a.1:c.250-263_947-68del
        Intron_number: 4-10/14
        Exon_number: 5-10/15
      F59G1.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
    Interactor (17)
  Isolation: Mutagen
  Genetics: Interpolated_map_position: II -0.855656
    Mapping_data: In_2_point: 40
        777
        4220
      In_multi_point (11)
      In_pos_neg_data: 3708
        4223
        4224
  Description: Phenotype (23)
    Phenotype_not_observed: WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference (35)
  Method: Deletion_allele