WormBase Tree Display for Variation: WBVar00105427
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| WBVar00105427 | Name | Public_name | WBVar00105427 | ||
|---|---|---|---|---|---|
| Other_name | pas10286 | ||||
| pkP2125 | |||||
| haw132516 | |||||
| cewivar00093913 | |||||
| F52H3.7b.2:c.-344T>C | |||||
| F52H3.7a.2:c.2558T>C | |||||
| F52H3.7a.1:c.2558T>C | |||||
| CE32894:p.Val853Ala | |||||
| HGVSg | CHROMOSOME_II:g.10013275A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F52H3 | |
| Flanking_sequences | cttactggagctgaagcaactgcggcgacgatttgcttctcgacaacgtcttccacaatttcaggctctgaagagttatgctcttcagaagaaggtgcctcttgcacttgtgaatgctcgactttttcgaatgtctcctcgcttccagattctggtgtagccgtctcgggatgtgcggcgtcactgtgaacatgcacgacgtcgaatgattcctcgtcgactgctgcttctggtgcagcttctactgttcctacgtgttgttgaacaactggttcttctactgattgggcgtcggttggg | cggattcaattgattcaacgtgataagctacggcaacttcttctactggattttctgatactggtgctgattctgatggggcggcatctccggatggggctggtgcagattcttcggaggctacgtgaacggattcaatattttcttcaactggtgcggcagactctgcttgtggttccttatgtgatgcctcaactactgtaacggattcttcgtgggctggttcggctgtggaagcagcttcgtctttatgatcttcagcttgtatagattcagatggagctgcttctgttgttggtg | |||
| Mapping_target | F52H3 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (36) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00240495 | |||
| WBVar01243632 | |||||
| WBVar01375416 | |||||
| WBVar01310357 | |||||
| WBVar00552381 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002265 | |||
| Transcript | F52H3.7a.2 (12) | ||||
| F52H3.7b.2 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52H3.7b.2:c.-344T>C | ||||
| cDNA_position | 2694 | ||||
| Exon_number | 1/9 | ||||
| F52H3.7a.1 (12) | |||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
