WormBase Tree Display for Gene: WBGene00002265
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| WBGene00002265 | SMap | S_parent | Sequence | F52H3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lec-2 | |||||||
| Sequence_name | F52H3.7 | ||||||||
| Molecular_name | F52H3.7a | ||||||||
| F52H3.7a.1 | |||||||||
| CE32894 | |||||||||
| F52H3.7b | |||||||||
| CE29330 | |||||||||
| F52H3.7a.2 | |||||||||
| F52H3.7b.1 | |||||||||
| F52H3.7b.2 | |||||||||
| Other_name | CELE_F52H3.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lec-2 | ||||||||
| DB_info | Database | AceView | gene | 2K300 | |||||
| WormQTL | gene | WBGene00002265 | |||||||
| WormFlux | gene | WBGene00002265 | |||||||
| NDB | locus_tag | CELE_F52H3.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002265|UniProtKB=Q20684 | |||||||
| family | PTHR11346 | ||||||||
| NCBI | gene | 174560 | |||||||
| RefSeq | protein | NM_001393174.1 | |||||||
| NM_001393173.1 | |||||||||
| TrEMBL | UniProtAcc | G5EGB1 | |||||||
| Q20684 | |||||||||
| UniProt_GCRP | UniProtAcc | Q20684 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lec | ||||||||
| Allele (105) | |||||||||
| Legacy_information | [Arata Y] No mutants known. Encodes predicted galectin. Predicted gene F52H3.7 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00019858 | ||||||||
| 00019859 | |||||||||
| 00019860 | |||||||||
| 00019861 | |||||||||
| 00068782 | |||||||||
| 00110337 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (26) | |||||||||
| Structured_description | Concise_description | lec-2 encodes a 'tandem repeat' type galectin (beta-galactosyl-binding lectin) containing two, tandemly arranged carbohydrate recognition domains; by homology, LEC-2 may play roles in cell adhesion and aggregation, proliferation, or programmed cell death. | Paper_evidence | WBPaper00005049 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable galactoside binding activity. Located in membrane raft and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52H3.7a | |||||||
| F52H3.7b | |||||||||
| Corresponding_CDS_history | F52H3.7a:wp92 | ||||||||
| Corresponding_transcript | F52H3.7a.1 | ||||||||
| F52H3.7a.2 | |||||||||
| F52H3.7b.1 | |||||||||
| F52H3.7b.2 | |||||||||
| Other_sequence (197) | |||||||||
| Associated_feature (22) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015446 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048034 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9450 | ||||||||
| Expr1022532 | |||||||||
| Expr1031335 | |||||||||
| Expr1151852 | |||||||||
| Expr2013035 | |||||||||
| Expr2031267 | |||||||||
| Drives_construct | WBCnstr00036347 | ||||||||
| Construct_product | WBCnstr00014015 | ||||||||
| WBCnstr00036347 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (278) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | II | Position | 1.82318 | Error | 0.001204 | |||
| Positive | Positive_clone | F52H3 | Person_evidence | WBPerson763 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 5053 | |||||||
| 4537 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026640 | ||||||||
| WBPaper00032075 | |||||||||
| WBPaper00033208 | |||||||||
| WBPaper00034766 | |||||||||
| WBPaper00037777 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048416 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065759 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
