WormBase Tree Display for Variation: WBVar00091898
expand all nodes | collapse all nodes | view schema
| WBVar00091898 | Name | Public_name | ok614 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_X:g.3730040_3732218delinsAAACAAAATGATGGAAGCTTACATTGAATATGCCGGGCTGTCCAACTGGGTTTCATAATCATTAACCTTTTTTGGAAACGGAAGCGGAAACTGATTCTTATTCTGCCTCCTTCTCTTCCGACACCAGAAAAATATGAAAAGTGCGAGACCAAACGCAATTATACCGAGTGGAATACCAATGCCCAGACCCAATGCAACTGCATTTACGCCTCCTTCACTGGAATGTTTGTCCCCTCCATAGTATGGATCGTAATATAATGGTGTTGTTGGCTGAAAGTTTAAAATAATTTTTTTGCCAAAATTTCAAAATTTGACCCCAGGAATTGTACTAGTTTATATAAGGTCAATACACTTATTCCAAAGACGAATGATTTTTTTCTCTCCAAACTTACTCTCCACCAGGGCTCGTTTTCTTCCGGCATGCTTTTTTGTGTGAATGTCGTAATGAAATCAAGAAAAAGTTAAAGTTAAGAAGGAAAATGAACAGAAGATCAATTTAACAAATTGTGGGGTACGAGAACGATCACCGTGATGA | ||||
| Sequence_details | SMap | S_parent | Sequence | T14G12 | |
| Flanking_sequences | tgcatattaaaattcttgtgaacacgtggt | ccagtgttttgaaatcaatgcatccgtttc | |||
| Mapping_target | T14G12 | ||||
| Type_of_mutation | Insertion | AAACAAAATGATGGAAGCTTACATTGAATATGCCGGGCTGTCCAACTGGGTTTCATAATCATTAACCTTTTTTGGAAACGGAAGCGGAAACTGATTCTTATTCTGCCTCCTTCTCTTCCGACACCAGAAAAATATGAAAAGTGCGAGACCAAACGCAATTATACCGAGTGGAATACCAATGCCCAGACCCAATGCAACTGCATTTACGCCTCCTTCACTGGAATGTTTGTCCCCTCCATAGTATGGATCGTAATATAATGGTGTTGTTGGCTGAAAGTTTAAAATAATTTTTTTGCCAAAATTTCAAAATTTGACCCCAGGAATTGTACTAGTTTATATAAGGTCAATACACTTATTCCAAAGACGAATGATTTTTTTCTCTCCAAACTTACTCTCCACCAGGGCTCGTTTTCTTCCGGCATGCTTTTTTGTGTGAATGTCGTAATGAAATCAAGAAAAAGTTAAAGTTAAGAAGGAAAATGAACAGAAGATCAATTTAACAAATTGTGGGGTACGAGAACGATCACCGTGATGA | |||
| Deletion | |||||
| PCR_product | ok614_external | ||||
| ok614_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035726 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006408 | |||
| WBGene00006454 | |||||
| Transcript | T14G12.2.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| Intron_number | 3-8/9 | ||||
| Exon_number | 4-10/10 | ||||
| T14G12.3.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 1114-? | ||||
| CDS_position | 494-? | ||||
| Protein_position | 165-? | ||||
| Intron_number | 5/6 | ||||
| Exon_number | 5-7/7 | ||||
| Interactor | WBInteraction000524187 | ||||
| Isolation | Mutagen | TMP/UV | |||
| Genetics | Mapping_data | In_multi_point | 5649 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
