WormBase Tree Display for Gene: WBGene00006454
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| WBGene00006454 | SMap | S_parent | Sequence | T14G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | aex-4 | Person_evidence | WBPerson655 | |||||
| Sequence_name | T14G12.2 | ||||||||
| Molecular_name | T14G12.2 | ||||||||
| T14G12.2.1 | |||||||||
| CE35769 | |||||||||
| Other_name | tag-81 | Person_evidence | WBPerson201 | ||||||
| CELE_T14G12.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | aex-4 | ||||||||
| DB_info | Database | AceView | gene | XE349 | |||||
| WormQTL | gene | WBGene00006454 | |||||||
| WormFlux | gene | WBGene00006454 | |||||||
| NDB | locus_tag | CELE_T14G12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006454|UniProtKB=G5EEN8 | |||||||
| family | PTHR19305 | ||||||||
| NCBI | gene | 188509 | |||||||
| RefSeq | protein | NM_076240.8 | |||||||
| SwissProt | UniProtAcc | G5EEN8 | |||||||
| TREEFAM | TREEFAM_ID | TF315125 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEN8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Oct 2005 15:36:35 | WBPerson2970 | Event | Acquires_merge | WBGene00020513 | ||||
| Name_change | Sequence_name | T14G12.2 | |||||||
| 3 | 20 Oct 2008 11:43:53 | WBPerson2970 | Event | Acquires_merge | WBGene00000087 | ||||
| Name_change | CGC_name | aex-4 | |||||||
| Acquires_merge | WBGene00000087 | ||||||||
| WBGene00020513 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aex | ||||||||
| Allele (31) | |||||||||
| Legacy_information | [Jim Thomas] Defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. | ||||||||
| See also sa22 | |||||||||
| [C.elegansII] sa22 : defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. [Thomas 1990; JT] | |||||||||
| Strain | WBStrain00027257 | ||||||||
| WBStrain00022822 | |||||||||
| WBStrain00029071 | |||||||||
| WBStrain00035726 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00004364 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019305 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Involved in positive regulation of defecation and positive regulation of protein secretion. Located in plasma membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T14G12.2 | |||||||
| Corresponding_transcript | T14G12.2.1 | ||||||||
| Other_sequence | MPC00142_1 | ||||||||
| CN477730.1 | |||||||||
| MP00331 | |||||||||
| CN477779.1 | |||||||||
| MP00411 | |||||||||
| Associated_feature | WBsf647962 | ||||||||
| WBsf647963 | |||||||||
| WBsf647964 | |||||||||
| WBsf647965 | |||||||||
| WBsf235519 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053340 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089980 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114418 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090298 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089873 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090139 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8376 | ||||||||
| Expr8377 | |||||||||
| Expr1015578 | |||||||||
| Expr1156926 | |||||||||
| Expr2009249 | |||||||||
| Expr2027486 | |||||||||
| Drives_construct | WBCnstr00005427 | ||||||||
| WBCnstr00005428 | |||||||||
| WBCnstr00037903 | |||||||||
| Construct_product | WBCnstr00005428 | ||||||||
| WBCnstr00037903 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction | WBInteraction000321103 | ||||||||
| WBInteraction000524187 | |||||||||
| WBInteraction000542400 | |||||||||
| WBProcess | WBbiopr:00000010 | ||||||||
| Map_info | Map | X | Position | -9.67526 | Error | 0.015501 | |||
| Positive | Positive_clone | T14G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5649 | |||||||
| 1550 | |||||||||
| 1551 | |||||||||
| 1588 | |||||||||
| 2291 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
