WormBase Tree Display for Gene: WBGene00006454
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WBGene00006454 | SMap | S_parent | Sequence | T14G12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | aex-4 | Person_evidence | WBPerson655 | |||
Sequence_name | T14G12.2 | ||||||
Molecular_name | T14G12.2 | ||||||
T14G12.2.1 | |||||||
CE35769 | |||||||
Other_name | tag-81 | Person_evidence | WBPerson201 | ||||
CELE_T14G12.2 | Accession_evidence | NDB | BX284606 | ||||
Public_name | aex-4 | ||||||
DB_info | Database | AceView | gene | XE349 | |||
WormQTL | gene | WBGene00006454 | |||||
WormFlux | gene | WBGene00006454 | |||||
NDB | locus_tag | CELE_T14G12.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006454|UniProtKB=G5EEN8 | |||||
family | PTHR19305 | ||||||
NCBI | gene | 188509 | |||||
RefSeq | protein | NM_076240.8 | |||||
SwissProt | UniProtAcc | G5EEN8 | |||||
TREEFAM | TREEFAM_ID | TF315125 | |||||
UniProt_GCRP | UniProtAcc | G5EEN8 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | aex | ||||||
Allele (31) | |||||||
Legacy_information | [Jim Thomas] Defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. | ||||||
See also sa22 | |||||||
[C.elegansII] sa22 : defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. [Thomas 1990; JT] | |||||||
Strain | WBStrain00027257 | ||||||
WBStrain00022822 | |||||||
WBStrain00029071 | |||||||
WBStrain00035726 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (28) | |||||||
Paralog | WBGene00004364 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019305 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Involved in positive regulation of defecation and positive regulation of protein secretion. Located in plasma membrane. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T14G12.2 | |||||
Corresponding_transcript | T14G12.2.1 | ||||||
Other_sequence | MPC00142_1 | ||||||
CN477730.1 | |||||||
MP00331 | |||||||
CN477779.1 | |||||||
MP00411 | |||||||
Associated_feature | WBsf647962 | ||||||
WBsf647963 | |||||||
WBsf647964 | |||||||
WBsf647965 | |||||||
WBsf235519 | |||||||
Experimental_info | RNAi_result | WBRNAi00053340 | Inferred_automatically | RNAi_primary | |||
WBRNAi00035577 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089980 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107620 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00114418 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090298 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089873 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090139 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr8376 | ||||||
Expr8377 | |||||||
Expr1015578 | |||||||
Expr1156926 | |||||||
Expr2009249 | |||||||
Expr2027486 | |||||||
Drives_construct | WBCnstr00005427 | ||||||
WBCnstr00005428 | |||||||
WBCnstr00037903 | |||||||
Construct_product | WBCnstr00005428 | ||||||
WBCnstr00037903 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (94) | |||||||
Interaction | WBInteraction000321103 | ||||||
WBInteraction000524187 | |||||||
WBInteraction000542400 | |||||||
WBProcess | WBbiopr:00000010 | ||||||
Map_info | Map | X | Position | -9.67526 | Error | 0.015501 | |
Positive | Positive_clone | T14G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5649 | |||||
1550 | |||||||
1551 | |||||||
1588 | |||||||
2291 | |||||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |