WormBase Tree Display for Gene: WBGene00006454
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WBGene00006454 | SMap | S_parent | Sequence | T14G12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | aex-4 | Person_evidence | WBPerson655 | |||||
Sequence_name | T14G12.2 | ||||||||
Molecular_name | T14G12.2 | ||||||||
T14G12.2.1 | |||||||||
CE35769 | |||||||||
Other_name | tag-81 | Person_evidence | WBPerson201 | ||||||
CELE_T14G12.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | aex-4 | ||||||||
DB_info | Database | AceView | gene | XE349 | |||||
WormQTL | gene | WBGene00006454 | |||||||
WormFlux | gene | WBGene00006454 | |||||||
NDB | locus_tag | CELE_T14G12.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006454|UniProtKB=G5EEN8 | |||||||
family | PTHR19305 | ||||||||
NCBI | gene | 188509 | |||||||
RefSeq | protein | NM_076240.8 | |||||||
SwissProt | UniProtAcc | G5EEN8 | |||||||
TREEFAM | TREEFAM_ID | TF315125 | |||||||
UniProt_GCRP | UniProtAcc | G5EEN8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 05 Oct 2005 15:36:35 | WBPerson2970 | Event | Acquires_merge | WBGene00020513 | ||||
Name_change | Sequence_name | T14G12.2 | |||||||
3 | 20 Oct 2008 11:43:53 | WBPerson2970 | Event | Acquires_merge | WBGene00000087 | ||||
Name_change | CGC_name | aex-4 | |||||||
Acquires_merge | WBGene00000087 | ||||||||
WBGene00020513 | |||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | aex | ||||||||
Allele (31) | |||||||||
Legacy_information | [Jim Thomas] Defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. | ||||||||
See also sa22 | |||||||||
[C.elegansII] sa22 : defecation defective, moderately constipated, anterior body contraction (aBoc) and expulsion muscle contraction (Exp) missing in about 6 of 7 defecation cycles, adult males unaffected and mate well. [Thomas 1990; JT] | |||||||||
Strain | WBStrain00027257 | ||||||||
WBStrain00022822 | |||||||||
WBStrain00029071 | |||||||||
WBStrain00035726 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00004364 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019305 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Involved in positive regulation of defecation and positive regulation of protein secretion. Located in plasma membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T14G12.2 | |||||||
Corresponding_transcript | T14G12.2.1 | ||||||||
Other_sequence | MPC00142_1 | ||||||||
CN477730.1 | |||||||||
MP00331 | |||||||||
CN477779.1 | |||||||||
MP00411 | |||||||||
Associated_feature | WBsf647962 | ||||||||
WBsf647963 | |||||||||
WBsf647964 | |||||||||
WBsf647965 | |||||||||
WBsf235519 | |||||||||
Experimental_info | RNAi_result | WBRNAi00053340 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035577 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089980 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107620 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00114418 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090298 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089873 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090139 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8376 | ||||||||
Expr8377 | |||||||||
Expr1015578 | |||||||||
Expr1156926 | |||||||||
Expr2009249 | |||||||||
Expr2027486 | |||||||||
Drives_construct | WBCnstr00005427 | ||||||||
WBCnstr00005428 | |||||||||
WBCnstr00037903 | |||||||||
Construct_product | WBCnstr00005428 | ||||||||
WBCnstr00037903 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (94) | |||||||||
Interaction (3) | |||||||||
WBProcess | WBbiopr:00000010 | ||||||||
Map_info | Map | X | Position | -9.67526 | Error | 0.015501 | |||
Positive | Positive_clone | T14G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5649 | |||||||
1550 | |||||||||
1551 | |||||||||
1588 | |||||||||
2291 | |||||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |