WormBase Tree Display for Variation: WBVar00088178
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| WBVar00088178 | Evidence | Paper_evidence | WBPaper00006290 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | ju406 | |||||||
| Other_name | T22D2.1.1:c.415-1G>A | ||||||||
| HGVSg | CHROMOSOME_II:g.2444104G>A | ||||||||
| Sequence_details | SMap | S_parent | Sequence | T22D2 | |||||
| Flanking_sequences | aaaaagttagttgcaaattccaaattttca | aaaaaaacggtccaagacatcagaagccga | |||||||
| Mapping_target | T22D2 | ||||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00006290 | ||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Laboratory | CZ | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00006882 | |||||||
| Transcript | T22D2.1.1 | VEP_consequence | splice_acceptor_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | T22D2.1.1:c.415-1G>A | ||||||||
| Intron_number | 3/19 | ||||||||
| Interactor | WBInteraction000519839 | ||||||||
| Genetics | Interpolated_map_position | II | -13.8069 | ||||||
| Description | Phenotype | WBPhenotype:0000050 | Paper_evidence | WBPaper00032244 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Animals typically hatched as lumpy two-fold embryos. | Paper_evidence | WBPaper00032244 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Genotype | vab-19(ju406)/Df | Paper_evidence | WBPaper00032244 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000409 | Paper_evidence | WBPaper00006290 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | ju406 behaved indistinguishably from e1036 at 15C. | Paper_evidence | WBPaper00006290 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00006290 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000494 | Paper_evidence | WBPaper00032244 | |||||||
| WBPaper00006290 | |||||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Embryos stopped elongating within 5-10 minutes of the twofold stage. | Paper_evidence | WBPaper00032244 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| vab-19(ju406)/nDf2 animals also arrested at two-fold; ju406 behaved indistinguishably from e1036 at 15C | Paper_evidence | WBPaper00006290 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00006290 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000019 | PATO:0000460 | Paper_evidence | WBPaper00032244 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Genotype | vab-19(ju406)/Df | Paper_evidence | WBPaper00032244 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001735 | Paper_evidence | WBPaper00032244 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Embryos did not show vigorous movement within the eggshell. | Paper_evidence | WBPaper00032244 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000021 | PATO:0000460 | Paper_evidence | WBPaper00032244 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Genotype | vab-19(ju406)/Df | Paper_evidence | WBPaper00032244 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference | WBPaper00006290 | ||||||||
| WBPaper00032244 | |||||||||
| Method | Substitution_allele |
