WormBase Tree Display for Variation: WBVar00035988
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| WBVar00035988 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00035988 | |||
| Other_name | haw38320 | ||||
| cewivar00193056 | |||||
| Y71D11A.1a.1:c.7278+1681T>C | |||||
| Y71D11A.1b.1:c.4575+1681T>C | |||||
| Y92C3A.3.1:c.*18A>G | |||||
| HGVSg | CHROMOSOME_III:g.1175089T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y92C3A | |
| Flanking_sequences | acaaaatgtgtagaatttgaagctt | attagtacatcaatcaattaacaat | |||
| Mapping_target | Y92C3A | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01256410 | |||
| WBVar01390825 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022356 | |||
| WBGene00022103 | |||||
| Transcript | Y92C3A.3.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y92C3A.3.1:c.*18A>G | ||||
| cDNA_position | 533 | ||||
| Exon_number | 5/5 | ||||
| Y71D11A.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71D11A.1b.1:c.4575+1681T>C | ||||
| Intron_number | 11/17 | ||||
| Y71D11A.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71D11A.1a.1:c.7278+1681T>C | ||||
| Intron_number | 18/25 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw38320 | ||||
| Method | WGS_Hawaiian_Waterston |
