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WormBase Tree Display for Gene: WBGene00304493

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Name Class

WBGene00304493SMapS_parentSequencePPA_ChrI
IdentityVersion4
NameCGC_namePpa-syx-5From_analysisInferred_from_orthology
Sequence_namePPA46714
Molecular_namePPA46714
PPA46714.1
PP74471
Public_namePpa-syx-5
SpeciesPristionchus pacificus
HistoryVersion_change121 Feb 2019 14:49:04WBPerson4055EventCreated
208 May 2019 10:09:25WBPerson1983Name_changeCGC_namePpa-syx-5
328 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
428 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-syx-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyx
RNASeq_FPKMWBls:000003213.2717From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.7566From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
8.34277From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
GO_annotation00302812
00302813
Ortholog (26)
ParalogWBGene00090764Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105441Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274995Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278566Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281849Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA46714
Corresponding_transcriptPPA46714.1
Other_sequence (44)
Experimental_infoMicroarray_results (12)
Expression_clusterWBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
Remark[210528 pad] The CGC name Ppa-syx-5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene