WormBase Tree Display for CDS: PPA46714
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PPA46714 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | DB_remark | PPA-SYX-5 protein; contains similarity to Pfam domains PF05739 (SNARE domain), PF11416 (Syntaxin-5 N-terminal, Sly1p-binding domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR021538 (Syntaxin-5, N-terminal, Sly1p-binding domain) | ||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00304493 | ||||
Corresponding_transcript | PPA46714.1 | |||||
Corresponding_protein | PP74471 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FG095035 | Inferred_automatically | transcript_builder.pl | |||
FG094926 | Inferred_automatically | transcript_builder.pl | ||||
FG095071 | Inferred_automatically | transcript_builder.pl | ||||
FG101295 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 13.2717 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.7566 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [190221 mh6] imported from pristionchus.org | Curator_confirmed | WBPerson18244 | |||
Method | curated |