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WormBase Tree Display for CDS: PPA46714

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Name Class

PPA46714SMapS_parentSequencePPA_ChrI
StructureSource_exons (13)
DB_infoDB_remarkPPA-SYX-5 protein; contains similarity to Pfam domains PF05739 (SNARE domain), PF11416 (Syntaxin-5 N-terminal, Sly1p-binding domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR021538 (Syntaxin-5, N-terminal, Sly1p-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00304493
Corresponding_transcriptPPA46714.1
Corresponding_proteinPP74471
Corresponding_oligo_set (12)
Matching_cDNAFG095035Inferred_automaticallytranscript_builder.pl
FG094926Inferred_automaticallytranscript_builder.pl
FG095071Inferred_automaticallytranscript_builder.pl
FG101295Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003213.2717From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.7566From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[190221 mh6] imported from pristionchus.orgCurator_confirmedWBPerson18244
Methodcurated