WormBase Tree Display for Gene: WBGene00195120
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| WBGene00195120 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | Ppa-mab-5 | Person_evidence | WBPerson606 | |||||
| Sequence_name | PPA20022 | ||||||||
| Molecular_name | PPA20022 | ||||||||
| PPA20022.1 | |||||||||
| PP54939 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076838 | ||||||||
| UMM-S66-6.15 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-mab-5 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 10 May 2010 15:35:39 | WBPerson2970 | Event | Created | |||
| 2 | 27 May 2010 16:39:21 | WBPerson1983 | Event | Acquires_merge | WBGene00109576 | ||||
| Name_change | Sequence_name | PPA20022 | |||||||
| Acquires_merge | WBGene00109576 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mab | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 11.9479 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 3.98263 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00230984 | ||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00096454 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00103778 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109180 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109566 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109569 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00204655 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Ppa-mab-5 encodes a homeodomain transcription factor related to the Antennapedia, Ultrabithorax, and abdominal-A family of homeodomain proteins; during postembryonic development, Ppa-mab-5 is required for specification of posterior hypodermal cell fates including P8.p, a cell that fuses with the hypodermal syncytium hyp7 in wild-type animals; in Ppa-mab-5 mutant animals, P8.p forms ectopic vulva, a fate unknown from Cel-mab-5 mutants. | Paper_evidence | WBPaper00003130 | |||||
| WBPaper00004286 | |||||||||
| WBPaper00004908 | |||||||||
| WBPaper00005768 | |||||||||
| Person_evidence | WBPerson606 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Is an ortholog of C. elegans mab-5. In C. elegans, mab-5 is involved in several processes, including neuroblast migration; positive regulation of mesodermal cell fate specification; and regulation of transcription by RNA polymerase II. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA20022 | |||||||
| Corresponding_transcript | PPA20022.1 | ||||||||
| Other_sequence (18) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_17318 | |||||||
| GPL14372_Probes_67246 | |||||||||
| GPL14372_Probes_67247 | |||||||||
| Reference (19) | |||||||||
| Method | Gene |
