WormBase Tree Display for Gene: WBGene00109569
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| WBGene00109569 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-lin-39 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA20015 | ||||||||
| Molecular_name | PPA20015 | ||||||||
| PPA20015.1 | |||||||||
| PP58478 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076831 | ||||||||
| GENEPREDICTION_SNAP300000076830 | |||||||||
| UMM-S66-6.41 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-lin-39 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 27 May 2010 16:39:21 | WBPerson1983 | Event | Acquires_merge | WBGene00109568 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:21 | WBPerson1983 | Name_change | CGC_name | Ppa-lin-39 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:26 | WBPerson1983 | Name_change | CGC_name | Ppa-lin-39 | ||||
| Acquires_merge | WBGene00109568 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| RNASeq_FPKM | WBls:0000032 | 33.3505 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 25.5602 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 33.3505 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 43.33 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00182361 | ||||||||
| 00182362 | |||||||||
| 00182363 | |||||||||
| 00182364 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00096454 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00103778 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109180 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109566 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00195120 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00204655 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Ppa-lin-39 encodes a homeodomain protein homologous to the Deformed and Sex combs reduced family of homeodomain proteins; Ppa-lin-39 is required for specification of mid-body region cell fates, including those of the VC neurons and the vulval precursor cells (VPCs), during postembryonic development; P(5-8).p in the central body region die of programmed cell death in Ppa-lin-39 mutants and thereby, adopt the fate of the anterior and posterior lineage homologs P(1-4,9-11).p; Cel-lin-39 and Ppa-lin-39 provide positional information to the VPCs in a similar manner; Ppa-lin-39, in contrast to Cel-lin-39, is not required as a transcription factor in response to the inductive signal for vulva formation. | Paper_evidence | WBPaper00003251 | |||||
| Person_evidence | WBPerson606 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans lin-39. In C. elegans, lin-39 is involved in several processes, including positive regulation of DNA-templated transcription; positive regulation of developmental process; and regulation of cell division. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA20015 | |||||||
| Corresponding_transcript | PPA20015.1 | ||||||||
| Other_sequence (19) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_17316 | |||||||
| GPL14372_Probes_17317 | |||||||||
| GPL14372_Probes_67222 | |||||||||
| GPL14372_Probes_67223 | |||||||||
| GPL14372_Probes_67224 | |||||||||
| GPL14372_Probes_67225 | |||||||||
| GPL14372_Probes_67226 | |||||||||
| Interaction | WBInteraction000557066 | ||||||||
| Reference (15) | |||||||||
| Remark | [190208 pad] The CGC name Ppa-lin-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lin-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
