WormBase Tree Display for Gene: WBGene00194986

WBGene00194986 SMap: S_parent: Sequence: T27F7
  Identity: Version: 2
    Name: CGC_name: pigb-1
      Sequence_name: T27F7.4
      Molecular_name: T27F7.4
        T27F7.4.1
        CE30458
      Other_name: CELE_T27F7.4 Accession_evidence: NDB BX284602
      Public_name: pigb-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 19 Feb 2010 11:13:47 WBPerson1849 Event: Split_from: WBGene00020868
        2 11 Dec 2018 16:50:34 WBPerson1983 Name_change: CGC_name: pigb-1
      Split_from: WBGene00020868
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pigb
    Allele (17)
    Strain: WBStrain00051415
    RNASeq_FPKM (74)
    GO_annotation: 00014302
      00014303
      00014304
      00014305
      00014306
      00014307
      00014308
      00014309
      00230921
    Ortholog (29)
    Paralog: WBGene00007556 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022629 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 80. Is an ortholog of human PIGB (phosphatidylinositol glycan anchor biosynthesis class B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0112216 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:8959)
  Molecular_info: Corresponding_CDS: T27F7.4
    Corresponding_transcript: T27F7.4.1
    Other_sequence (19)
  Experimental_info: RNAi_result (50)
    Expr_pattern: Expr1040473
      Expr1157896
      Expr2006586
      Expr2024802
    Microarray_results (14)
    Expression_cluster: WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053810:clk-1(qm30)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064158:xpo-1(RNAi)_downregulated
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_3_5
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
  Map_info: Map: II Position: -2.60434
    Positive: Positive_clone: T27F7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene