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WormBase Tree Display for Gene: WBGene00152462

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Name Class

WBGene00152462SMapS_parentSequenceCbre_Contig248
IdentityVersion2
NameCGC_nameCbn-unc-38From_analysisInferred_from_orthology
Sequence_nameCBN13737
Molecular_nameCBN13737
CBN13737.1
CN19560
Public_nameCbn-unc-38
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:51WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbn-unc-38
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000020.304756From_analysisRNASeq.brenneri.WBls:0000002.control_median
0.525752From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0.609512From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0.798354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.11676From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.23822From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
1.49467From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040.244206From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0.488411From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:000002410.0292From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
10.4615From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
10.6115From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
10.8243From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
9.57505From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:00000384.26943From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
4.34535From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
4.42127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (13)
WBls:00001010.626338From_analysisRNASeq.brenneri.total_over_all_stages.control_median
1.44922From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00213358
00213359
00213360
00213361
00213362
00213363
00213364
00213365
OrthologWBGene00006774Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039464Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00072191Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00176985Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g10464Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g10467Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12243Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g12244Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g13080Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10706Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g143Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15409Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4843Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25433Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_00197.g6777Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00197.g6778Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-38Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9762Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02628.g27301Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10350Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000225Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10735Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13629Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g22402Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5307Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10079400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00223751Brugia malayiFrom_analysisWormBase-Compara
WBGene00228955Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g794Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237784Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00238596Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00274031Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260575Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00302451Trichuris murisFrom_analysisWormBase-Compara
Paralog (128)
Structured_descriptionAutomated_descriptionPredicted to enable acetylcholine-gated monoatomic cation-selective channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in postsynaptic membrane. Is an ortholog of C. elegans unc-38. In C. elegans, unc-38 is involved in several processes, including calcium ion import across plasma membrane; neuromuscular synaptic transmission; and regulation of multicellular organismal process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN13737
Corresponding_transcriptCBN13737.1
Other_sequence (42)
Experimental_infoMicroarray_resultsGPL14142_CBN13737_954-1013_0.830_57_C
GPL14142_CBN13737_1366-1425_0.942_1_B
GPL14142_CBN13737_1478-1537_0.481_255_A
MethodGene