WormBase Tree Display for Gene: WBGene00114387
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| WBGene00114387 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-fum-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA24833 | ||||||||
| Molecular_name | PPA24833 | ||||||||
| PPA24833.1 | |||||||||
| PP55487 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000083496 | ||||||||
| GENEPREDICTION_SNAP300000083497 | |||||||||
| UMM-S50-45.47 | Person_evidence | WBPerson606 | |||||||
| Ppa-sms-3 | |||||||||
| Public_name | Ppa-fum-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-sms-3 | ||||
| 3 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00114388 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-fum-1 | ||||
| Other_name | Ppa-sms-3 | ||||||||
| 5 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-fum-1 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-fum-1 | ||||
| Acquires_merge | WBGene00114388 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fum | ||||||||
| RNASeq_FPKM | WBls:0000032 | 6.5562 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.40774 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 2.65465 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00184501 | ||||||||
| 00184502 | |||||||||
| 00184503 | |||||||||
| 00184504 | |||||||||
| 00184505 | |||||||||
| 00184506 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00204834 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable fumarate hydratase activity. Predicted to be involved in fumarate metabolic process and tricarboxylic acid cycle. Predicted to be part of tricarboxylic acid cycle enzyme complex. Is an ortholog of C. elegans fum-1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA24833 | |||||||
| Corresponding_transcript | PPA24833.1 | ||||||||
| Other_sequence (285) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_61592 | |||||||
| GPL14372_Probes_61593 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [190208 pad] The CGC name Ppa-fum-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-fum-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
