WormBase Tree Display for Gene: WBGene00114387

WBGene00114387 SMap: S_parent: Sequence: PPA_ChrIII
  Identity: Version: 8
    Name: CGC_name: Ppa-fum-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA24833
      Molecular_name: PPA24833
        PPA24833.1
        PP55487
      Other_name: GENEPREDICTION_SNAP300000083496
        GENEPREDICTION_SNAP300000083497
        UMM-S50-45.47 Person_evidence: WBPerson606
        Ppa-sms-3
      Public_name: Ppa-fum-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 18 Nov 2010 11:54:46 WBPerson2970 Name_change: CGC_name: Ppa-sms-3
        3 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00114388
        4 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-fum-1
                Other_name: Ppa-sms-3
        5 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Ppa-fum-1
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-fum-1
      Acquires_merge: WBGene00114388
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fum
    RNASeq_FPKM: WBls:0000032 6.5562 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 1.40774 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        2.65465 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00184501
      00184502
      00184503
      00184504
      00184505
      00184506
    Ortholog: WBGene00143841 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00030818 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00224905 Brugia malayi From_analysis: WormBase-Compara
      WBGene00001503 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00124749 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00244487 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g5372 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11858 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g738 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11333 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10505 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22728 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20970 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3349 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3219 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3949 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5872 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_03917.g18475 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-fum-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold615.g5986 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06302.g36353 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07350 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000132 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_009016 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13901 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1521 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30050710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00067657 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00077348 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIII_pilon.g8167 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00259602 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00296470 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301421 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00204834 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable fumarate hydratase activity. Predicted to be involved in fumarate metabolic process and tricarboxylic acid cycle. Predicted to be part of tricarboxylic acid cycle enzyme complex. Is an ortholog of C. elegans fum-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA24833
    Corresponding_transcript: PPA24833.1
    Other_sequence (285)
  Experimental_info: Microarray_results: GPL14372_Probes_61592
      GPL14372_Probes_61593
    Expression_cluster: WBPaper00041207:PP_dauer_down
  Remark: [190208 pad] The CGC name Ppa-fum-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-fum-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene