WormBase Tree Display for Gene: WBGene00073420

WBGene00073420 SMap: S_parent: Sequence: Crem_Contig1079
  Identity: Version: 5
    Name: CGC_name: Cre-lip-1.2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE29272
      Molecular_name: CRE29272
        CRE29272.1
        RP26485
      Other_name: cr01.sctg742.wum.2
      Public_name: Cre-lip-1.2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:29 WBPerson1847 Event: Created
        2 03 Jul 2008 11:46:40 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE29272
                Other_name: cr01.sctg742.wum.2
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cre-lip-1.2
        4 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Removed
        5 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Cre-lip-1.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lip
    RNASeq_FPKM: WBls:0000004 8.65698 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        8.76256 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        8.86815 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 1.37943 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        16.1453 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        20.1476 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        20.2945 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        20.4414 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        22.6128 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 11.3366 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        15.2243 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        15.4333 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
        3.35227 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 24.4252 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        25.5858 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        3.38114 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        4.17185 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        4.29552 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        44.5548 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        47.6852 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        49.4265 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 (12)
      WBls:0000101 15.3288 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        18.4621 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00166958
      00166959
      00166960
      00166961
    Ortholog (29)
    Paralog: WBGene00057397 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00067090 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00051618 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00053946 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054992 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055470 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00065448 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00065671 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00073358 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00079849 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable MAP kinase tyrosine/serine/threonine phosphatase activity. Predicted to be involved in dephosphorylation. Is an ortholog of C. elegans lip-1. In C. elegans, lip-1 is involved in several processes, including negative regulation of Ras protein signal transduction; positive regulation of vulval development; and vulval cell fate specification. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE29272
    Corresponding_transcript: CRE29272.1
    Other_sequence: EY473011.1
      CGC00182_1
      CGC00688_1
  Experimental_info: Expr_pattern: Expr1102997
    Microarray_results: GPL14146_CRE24700_951-1010_0.936_4_A
  Remark: [190507 pad] The CGC name Cre-lip-1.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene