WormBase Tree Display for Gene: WBGene00064270

WBGene00064270 SMap: S_parent: Sequence: Crem_Contig9
  Identity: Version: 3
    Name: CGC_name: Cre-prg-1.3 From_analysis: Inferred_from_orthology
      Sequence_name: CRE29675
      Molecular_name: CRE29675
        CRE29675.1
        RP26932
      Other_name: cr01.sctg47.wum.36
      Public_name: Cre-prg-1.3
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:57 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE29675
                Other_name: cr01.sctg47.wum.36
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cre-prg-1.3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: prg
    RNASeq_FPKM: WBls:0000004 0.36621 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        0.488348 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        0.610485 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (25)
      WBls:0000027 0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
            RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
            RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
            RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
            RNASeq.remanei.WBls:0000027.control_mean
            RNASeq.remanei.WBls:0000027.control_median
      WBls:0000038 10.7909 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        12.4676 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        4.63824 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        9.29891 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
      WBls:0000041 0.424026 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.622336 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.67413 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        28.2121 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        29.4563 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        55.75 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        58.3191 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        60.9484 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 1.10133 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        17.4831 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00159573
      00159574
    Ortholog: WBGene00004178 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00004179 Caenorhabditis elegans From_analysis: OMA
            TreeFam
      WBGene00032975 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00124776 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00113193 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00154222 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00161465 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      CBOVI.g10186 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15904 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4737 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g9290 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8606 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10815 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17151 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g4678 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11549 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g22073 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1652 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5922 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g6792 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00048.g2550 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_08871.g21750 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_09051.g21854 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_15928.g25210 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_16198.g25298 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_17075.g25583 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_28602.g27664 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g1824 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold591.g5111 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21009 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00873.g16331 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07012 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002680 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14787 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_10098600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10637 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrI_pilon.g1418 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00066619 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00070957 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00082212 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00071850 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00084046 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Is an ortholog of C. elegans prg-1. In C. elegans, prg-1 is involved in 21U-RNA metabolic process; gamete generation; and positive regulation of mitotic nuclear division. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE29675
    Corresponding_transcript: CRE29675.1
    Other_sequence (13)
  Experimental_info: Expr_pattern: Expr1103806
    Microarray_results: GPL14146_CRE29675_1980-2039_0.916_10_C
      GPL14146_CRE29675_2071-2130_0.834_86_B
      GPL14146_CRE29675_2554-2613_0.656_377_A
  Method: Gene