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WormBase Tree Display for Gene: WBGene00053790

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Name Class

WBGene00053790SMapS_parentSequenceCrem_Contig1
IdentityVersion7
NameCGC_nameCre-unc-105From_analysisInferred_from_orthology
Sequence_nameCRE02017
Molecular_nameCRE02017
CRE02017.1
RP34711
Other_namecr01.sctg2.wum.568
Public_nameCre-unc-105
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:44WBPerson2970Name_changeCGC_nameCre-unc-105
303 Jul 2008 11:44:45WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE02017
Other_namecr01.sctg2.wum.568
408 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
508 May 2019 10:09:22WBPerson1983Name_changeCGC_nameCre-unc-105
628 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
728 Jul 2021 11:12:27WBPerson1983Name_changeCGC_nameCre-unc-105
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000040.293492From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
0.792236From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
1.29098From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.238122From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
5.32111From_analysisRNASeq.remanei.WBls:0000027.control_mean
6.77643From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
6.78887From_analysisRNASeq.remanei.WBls:0000027.control_median
6.80131From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
7.46857From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:00000380.723353From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
4.59552From_analysisRNASeq.remanei.WBls:0000038.control_mean
5.62147From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
7.44175From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:00000411.01165From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
1.50336From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
1.57182From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
1.70176From_analysisRNASeq.remanei.WBls:0000041.control_median
1.74155From_analysisRNASeq.remanei.WBls:0000041.control_mean
1.8317From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
1.92584From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
2.60493From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (11)
WBls:00001011.53759From_analysisRNASeq.remanei.total_over_all_stages.control_median
2.37927From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00149046
00149047
00149048
00149049
00149050
OrthologWBGene00006832Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00020897Caenorhabditis elegansFrom_analysisTreeFam
WBGene00024093Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00193948Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00193474Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00212193Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00161303Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00222950Brugia malayiFrom_analysisWormBase-Compara
WBGene00247051Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00099877Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g6823Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16118Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6515Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12831Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6442Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9396Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3445Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13214Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6617Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19243Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00115.g4756Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_02515.g17272Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-105Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18496Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01896.g23753Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08787Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09363Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20789Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20152800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5163Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00265038Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (27)
Structured_descriptionAutomated_descriptionPredicted to enable sodium channel activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-105. In C. elegans, unc-105 is involved in calcium ion transport; magnesium ion transport; and muscle organ development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE02017
Corresponding_transcriptCRE02017.1
Other_sequenceOden_isotig26078
MH07095
Oden_isotig19678
JI175583.1
JI170191.1
Name_isotig03641
Dviv_isotig27200
GO239869.1
Experimental_infoExpr_patternExpr1105243
Microarray_resultsGPL14146_CRE02017_1989-2048_0.892_25_A
GPL14146_CRE02017_2095-2154_0.923_9_B
GPL14146_CRE02017_2184-2243_0.711_240_C
Remark[190208 pad] The CGC name Cre-unc-105 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cre-unc-105 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene