WormBase Tree Display for Gene: WBGene00038900

WBGene00038900 SMap: S_parent: Sequence: cb25.fpc4140
  Identity: Version: 2
    Name: CGC_name: Cbr-unc-54 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19730
      Molecular_name: CBG19730
        CBG19730.1
        CBP04616
      Other_name: CBG_19730 Accession_evidence: NDB HE601474
      Public_name: Cbr-unc-54
    DB_info: Database: NDB locus_tag CBG_19730
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-unc-54
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    Allele (18)
    RNASeq_FPKM: WBls:0000002 418.668 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        523.12 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        636.069 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        96.8136 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        142.68 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        332.9 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        349.671 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.957139 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        16.8574 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        8.90727 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        11.066 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        15.3833 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 88.9809 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        93.675 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        98.3692 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        101.797 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        93.4789 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        96.4325 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        99.5363 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 397.815 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        498.885 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        586.871 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        863.914 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        562.431 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        596.648 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        625.977 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 758.08 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1019.66 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        462.187 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        491.512 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        649.139 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        695.031 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        806.766 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 157.143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        363.289 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        376.591 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        389.893 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        410.264 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        730.731 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        204.844 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        382.495 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        449.071 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 279.328 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        305.211 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        310.255 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        317.385 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        327.713 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        426.384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        313.82 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        355.294 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        493.202 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 397.815 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        410.039 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        371.503 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        376.591 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00142393
      00142394
      00142395
      00142396
    Ortholog: WBGene00002348 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00003514 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00003515 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00003776 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00003777 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00006789 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00009730 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00012437 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00019064 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00060889 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00147183 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00117763 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00131142 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g9085 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6392 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5864 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8240 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4259 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22272 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9281 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14410 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1808 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12497 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_15248.g24974 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g3807 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold572.g4325 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01801.g23223 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_06941.g37197 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09136 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001454 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02608 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2033 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10010600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00223568 Brugia malayi From_analysis: WormBase-Compara
      WBGene00224377 Brugia malayi From_analysis: WormBase-Compara
      chrI_pilon.g2982 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242128 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00246956 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00266272 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292203 Trichuris muris From_analysis: WormBase-Compara
    Paralog (22)
    Structured_description: Automated_description: Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is an ortholog of C. elegans unc-54. In C. elegans, unc-54 is involved in several processes, including egg-laying behavior; muscle contraction; and skeletal muscle myosin thick filament assembly. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19730
    Corresponding_CDS_history: CBG19730:bp194
      CBG19730:bp255
    Corresponding_transcript: CBG19730.1
    Other_sequence (385)
  Experimental_info: Expr_pattern: Expr1053340
    Microarray_results: GPL8303_CB6_WBGene00038900_A
      GPL8303_CB6_WBGene00038900_B
      GPL14143_CBG19730_4738-4797_0.762_125_A
      GPL14143_CBG19730_5832-5891_0.952_1_B
    Expression_cluster: WBPaper00051425:CB_L1_vs_embryo_upregulated
      WBPaper00051425:CB_L4_vs_embryo_upregulated
  Method: Gene