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WormBase Tree Display for Gene: WBGene00032357

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Name Class

WBGene00032357SMapS_parentSequencecb25.fpc2454a2
IdentityVersion4
NameCGC_nameCbr-tra-2From_analysisInferred_from_orthology
Sequence_nameCBG11194
Molecular_nameCBG11194a
CBG11194a.1
CBP38209
CBG11194b
CBP41441
CBG11194c
CBP43518
CBG11194b.1
CBG11194c.1
Other_nameCBG_11194Accession_evidenceNDBHE601002
Public_nameCbr-tra-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-tra-2
313 Nov 2007 14:06:35WBPerson2970EventAcquires_mergeWBGene00000360
424 Jul 2008 11:56:31WBPerson1847EventAcquires_mergeWBGene00032356
Acquires_mergeWBGene00000360
WBGene00032356
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtra
AlleleWBVar00275592Paper_evidenceWBPaper00031485
WBVar00275593Paper_evidenceWBPaper00031485
WBVar00275594Paper_evidenceWBPaper00031485
WBVar00275591
WBVar00275589
RNASeq_FPKMWBls:000000210.5637From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
10.634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.73183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.97651From_analysisRNASeq.briggsae.WBls:0000002.control_mean
10.5989From_analysisRNASeq.briggsae.WBls:0000002.control_median
12.5387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.86706From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000318.4564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
20.4806From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
22.5047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
15.8865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
18.9492From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000420.5448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
22.1064From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
23.668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
18.837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.2707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
20.4703From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
20.7582From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:000002710.9385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.23413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.46369From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.87877From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.04623From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.56627From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.62876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.35588From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000382.30097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.48253From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.20468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.45676From_analysisRNASeq.briggsae.WBls:0000038.control_median
6.70883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.71564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004113.7891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.2033From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
21.909From_analysisRNASeq.briggsae.WBls:0000041.control_median
22.381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
23.206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
11.9781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
18.891From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.5546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
20.9958From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006310.6042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.20513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.58124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
8.80373From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
9.14609From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.53617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.40591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.69248From_analysisRNASeq.briggsae.WBls:0000063.control_median
8.85606From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.0407From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.42243From_analysisRNASeq.briggsae.total_over_all_stages.control_median
10.584From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.9934From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00135787
00135788
00135789
Ortholog (19)
Structured_descriptionConcise_descriptionCbr-tra-2 encodes a plasma membrane protein that is orthologous to C. elegans TRA-2; as in C. elegans, loss of Cbr-tra-2 function results in incomplete sexual cell fate transformations of XX hermaphrodites to male fates, including a one-armed gonad containing only sperm, an abnormal male tail with incomplete sensory rays, and lack of male mating behavior.Paper_evidenceWBPaper00031485
Curator_confirmedWBPerson1843
Date_last_updated09 Apr 2012 00:00:00
Automated_descriptionPredicted to enable transmembrane signaling receptor activity. Predicted to be involved in hermaphrodite germ-line sex determination and hermaphrodite somatic sex determination. Is an ortholog of C. elegans tra-2. In C. elegans, tra-2 is involved in developmental process involved in reproduction and oocyte fate determination.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11194a
CBG11194b
CBG11194c
Corresponding_CDS_historyCBG11194:bp194
CBG11194:bp207
CBG11194:bp208
CBG11194:bp255
Corresponding_transcriptCBG11194a.1
CBG11194b.1
CBG11194c.1
Other_sequenceCRC10370_1
Oden_isotig17356
CR05644
Experimental_infoExpr_patternExpr1056987
Microarray_resultsGPL8303_CB6_WBGene00032356_A
GPL8303_CB6_WBGene00032356_B
GPL14143_CBG11194_2076-2135_0.797_17_B
GPL14143_CBG11194_5532-5591_0.787_33_A
GPL14143_CBG11194_5566-5625_0.808_1_C
ReferenceWBPaper00031485
WBPaper00034851
WBPaper00040437
WBPaper00040947
WBPaper00044280
MethodGene