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WormBase Tree Display for Gene: WBGene00031908

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Name Class

WBGene00031908SMapS_parentSequencecb25.fpc2328
IdentityVersion3
NameCGC_nameCbr-fln-1From_analysisInferred_from_orthology
Sequence_nameCBG10542
Molecular_nameCBG10542a
CBG10542a.1
CBP02575
CBG10542b
CBP46211
CBG10542c
CBP44139
CBG10542b.1
CBG10542c.1
Other_nameCBG_10542Accession_evidenceNDBHE601209
CBG_10541
Public_nameCbr-fln-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
231 Aug 2016 10:29:44WBPerson4025EventAcquires_mergeWBGene00031907
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-fln-1
Acquires_mergeWBGene00031907
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfln
RNASeq_FPKMWBls:000000254.0295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
78.562From_analysisRNASeq.briggsae.WBls:0000002.control_mean
85.7422From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
95.9142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
76.1242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
77.9525From_analysisRNASeq.briggsae.WBls:0000002.control_mean
80.9332From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000034.20384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
6.46563From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
8.72742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
7.63005From_analysisRNASeq.briggsae.WBls:0000003.control_mean
9.95889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000424.9301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
25.224From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
25.5179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
24.4487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
24.6894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
25.3307From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.0675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.4021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
32.302From_analysisRNASeq.briggsae.WBls:0000027.control_mean
35.0997From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
48.4042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
41.7519From_analysisRNASeq.briggsae.WBls:0000027.control_median
45.2099From_analysisRNASeq.briggsae.WBls:0000027.control_mean
83.9337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003569.0773From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038120.896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
75.7929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
84.4841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
86.8312From_analysisRNASeq.briggsae.WBls:0000038.control_median
89.1783From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
92.5878From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:0000041121.165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
129.933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
140.728From_analysisRNASeq.briggsae.WBls:0000041.control_median
142.602From_analysisRNASeq.briggsae.WBls:0000041.control_mean
151.523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
167.787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
108.261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
137.437From_analysisRNASeq.briggsae.WBls:0000041.control_mean
137.943From_analysisRNASeq.briggsae.WBls:0000041.control_median
145.954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063130.208From_analysisRNASeq.briggsae.WBls:0000063.control_mean
159.791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
162.101From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
164.308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
164.84From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
111.744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
127.131From_analysisRNASeq.briggsae.WBls:0000063.control_mean
160.946From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010178.7012From_analysisRNASeq.briggsae.total_over_all_stages.control_median
79.7142From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
76.9446From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
77.4127From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Contained_in_operonCBOPA0344
Ortholog (37)
ParalogWBGene00033177Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034737Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036178Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036548Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038321Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040033Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040886Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041700Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041850Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin E-set; Filamin/ABP280 repeat; Filamin/ABP280 repeat-like; Immunoglobulin-like fold; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans fln-1. In C. elegans, fln-1 is involved in several processes, including axon development; semaphorin-plexin signaling pathway; and uterus morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10542a
CBG10542b
CBG10542c
Corresponding_CDS_historyCBG10542:bp194
CBG10542:bp255
Corresponding_transcriptCBG10542a.1
CBG10542b.1
CBG10542c.1
Other_sequence (89)
Experimental_infoExpr_patternExpr1060931
Expr1061712
Microarray_resultsGPL8303_CB6_WBGene00031907_A
GPL8303_CB6_WBGene00031908_A
GPL8303_CB6_WBGene00031908_B
GPL14143_CBG10541_3271-3330_0.884_8_B
GPL14143_CBG10541_3493-3552_0.827_44_C
GPL14143_CBG10541_3581-3640_0.883_9_A
GPL14143_CBG10542_3067-3126_0.929_3_C
GPL14143_CBG10542_3096-3155_0.955_2_B
GPL14143_CBG10542_3210-3269_0.968_1_A
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_upregulated
WBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene