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WormBase Tree Display for Gene: WBGene00041850

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Name Class

WBGene00041850SMapS_parentSequencecb25.fpc4470
IdentityVersion2
NameCGC_nameCbr-atn-1From_analysisInferred_from_orthology
Sequence_nameCBG23504
Molecular_nameCBG23504
CBG23504.1
CBP05491
Other_nameCBG_23504Accession_evidenceNDBHE601533
Public_nameCbr-atn-1
DB_infoDatabaseNDBlocus_tagCBG_23504
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-atn-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatn
RNASeq_FPKMWBls:000000260.0633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
70.1818From_analysisRNASeq.briggsae.WBls:0000002.control_mean
72.6423From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
77.8397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
33.8181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
61.0909From_analysisRNASeq.briggsae.WBls:0000002.control_mean
66.3528From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000316.793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
17.0429From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
17.2927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
17.6029From_analysisRNASeq.briggsae.WBls:0000003.control_mean
18.7231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000456.4929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
57.77From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
59.047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
53.1882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
53.2634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
55.7904From_analysisRNASeq.briggsae.WBls:0000004.control_mean
56.9607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027107.034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
15.2063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
38.7874From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
53.6759From_analysisRNASeq.briggsae.WBls:0000027.control_mean
142.064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
72.9107From_analysisRNASeq.briggsae.WBls:0000027.control_median
75.7729From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035107.247From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038109.435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
112.356From_analysisRNASeq.briggsae.WBls:0000038.control_median
115.278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
119.964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
34.4905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
94.7919From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004125.3831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
39.5819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
40.5089From_analysisRNASeq.briggsae.WBls:0000041.control_median
41.4359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
50.1215From_analysisRNASeq.briggsae.WBls:0000041.control_mean
94.0852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
41.7169From_analysisRNASeq.briggsae.WBls:0000041.control_median
41.9978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
51.9741From_analysisRNASeq.briggsae.WBls:0000041.control_mean
69.3606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
39.6651From_analysisRNASeq.briggsae.WBls:0000063.control_mean
48.0837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
48.6286From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
48.7236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
52.8898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
43.8857From_analysisRNASeq.briggsae.WBls:0000063.control_mean
48.6761From_analysisRNASeq.briggsae.WBls:0000063.control_median
64.9884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010152.8898From_analysisRNASeq.briggsae.total_over_all_stages.control_median
59.6605From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
53.2258From_analysisRNASeq.briggsae.total_over_all_stages.control_median
59.5926From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (24)
ParalogWBGene00031908Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033177Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034737Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036178Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036548Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038321Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040033Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040886Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041700Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Spectrin/alpha-actinin; EF-hand, Ca insensitive; Ca2+ insensitive EF hand; EF-hand domain pair; Calponin homology domain; CH domain superfamily; Calponin homology (CH) domain; and Spectrin repeat. Is an ortholog of C. elegans atn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23504
Corresponding_transcriptCBG23504.1
Other_sequence (85)
Experimental_infoExpr_patternExpr1057655
Microarray_resultsGPL8303_CB6_WBGene00041850_A
GPL8303_CB6_WBGene00041850_B
GPL8303_CB6_WBGene00041850_C
GPL8303_CB6_WBGene00041850_D
GPL8303_CB6_WBGene00041850_E
GPL14143_CBG23504_2253-2312_0.915_8_C
GPL14143_CBG23504_2462-2521_0.931_2_B
GPL14143_CBG23504_2575-2634_0.704_233_A
MethodGene