WormBase Tree Display for Gene: WBGene00022855

WBGene00022855 SMap: S_parent: Sequence: ZK1127
  Identity: Version: 3
    Name: CGC_name: tcer-1 Person_evidence: WBPerson2819
            WBPerson1157
      Sequence_name: ZK1127.9
      Molecular_name (15)
      Other_name: gos-1 Person_evidence: WBPerson2819
        CELE_ZK1127.9 Accession_evidence: NDB BX284602
      Public_name: tcer-1
    DB_info: Database: AceView gene 2H336C
            2H336
        WormQTL gene WBGene00022855
        WormFlux gene WBGene00022855
        NDB locus_tag CELE_ZK1127.9
        Panther gene CAEEL|WormBase=WBGene00022855|UniProtKB=Q95PX7
          family PTHR15377
        NCBI gene 174150
        RefSeq protein NM_001393112.1
            NM_001381486.2
            NM_001393111.1
            NM_001383878.2
        TREEFAM TREEFAM_ID TF317748
        TrEMBL UniProtAcc Q95PX9
            Q86MN9
            Q95PX8
            Q95PX7
        UniProt_GCRP UniProtAcc Q95PX7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:06 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Sep 2009 13:39:27 WBPerson9133 Name_change: CGC_name: tcer-1
        3 09 Oct 2017 09:36:16 WBPerson2970 Name_change: Other_name: gos-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tcer
    Allele (47)
    Strain: WBStrain00004897
      WBStrain00004899
    RNASeq_FPKM (74)
    GO_annotation: 00083443
      00083444
      00083445
      00087975
      00087976
      00126826
    Ortholog (39)
    Paralog: WBGene00022853 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Located in nuclear periphery. Expressed in several structures, including germ cell; gonad; hypodermal cell; intestinal cell; and somatic cell. Is an ortholog of human TCERG1 (transcription elongation regulator 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1127.9a
      ZK1127.9b
      ZK1127.9c
      ZK1127.9d
    Corresponding_CDS_history: ZK1127.9e:wp274
    Corresponding_transcript: ZK1127.9a.1
      ZK1127.9b.1
      ZK1127.9c.1
      ZK1127.9c.2
      ZK1127.9c.3
      ZK1127.9c.4
      ZK1127.9d.1
    Other_sequence (61)
    Associated_feature: WBsf650203
      WBsf223279
  Experimental_info: RNAi_result (33)
    Expr_pattern: Expr7190
      Expr10747
      Expr12818
      Expr1040111
      Expr1162561
      Expr2017362
      Expr2035499
    Drives_construct (11)
    Construct_product (12)
    Regulate_expr_cluster: WBPaper00049217:TCER-1_downregulated
      WBPaper00049217:TCER-1_upregulated
    Antibody: WBAntibody00001520
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_embryo_SelectivelyEnriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049217:TCER-1_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:nucleus_specific
      WBPaper00051555:atm-1(gk186)_regulated_protein
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:trcs-2_5724-R11A8.7_17645
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:etr-1(lq61)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064122:vulva_transcriptome
      WBPaper00064716:paraquat_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_enriched
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      cgc4489_group_7
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      [cgc6390]:intrinsic
    Interaction (40)
  Map_info: Map: II Position: 0.349925 Error: 0.00503
    Positive: Positive_clone: ZK1127 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (28)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene